Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18770 and ABZR87_RS18775 are separated by 16 nucleotides ABZR87_RS18775 and ABZR87_RS18780 are separated by 457 nucleotides ABZR87_RS18780 and ABZR87_RS18785 are separated by 144 nucleotides
ABZR87_RS18770: ABZR87_RS18770 - S10 family peptidase, at 564,376 to 566,109
_RS18770
ABZR87_RS18775: ABZR87_RS18775 - hypothetical protein, at 566,126 to 566,257
_RS18775
ABZR87_RS18780: ABZR87_RS18780 - hypothetical protein, at 566,715 to 566,861
_RS18780
ABZR87_RS18785: ABZR87_RS18785 - FMN-dependent NADH-azoreductase, at 567,006 to 567,632
_RS18785
Position (kb) 566
567 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 565.141 kb on + strand, within ABZR87_RS18770 at 565.141 kb on + strand, within ABZR87_RS18770 at 565.141 kb on + strand, within ABZR87_RS18770 at 565.141 kb on + strand, within ABZR87_RS18770 at 565.141 kb on + strand, within ABZR87_RS18770 at 565.142 kb on - strand, within ABZR87_RS18770 at 565.142 kb on - strand, within ABZR87_RS18770 at 565.142 kb on - strand, within ABZR87_RS18770 at 565.142 kb on - strand, within ABZR87_RS18770 at 565.142 kb on - strand, within ABZR87_RS18770 at 565.204 kb on + strand, within ABZR87_RS18770 at 565.337 kb on + strand, within ABZR87_RS18770 at 565.338 kb on - strand, within ABZR87_RS18770 at 565.355 kb on - strand, within ABZR87_RS18770 at 565.418 kb on - strand, within ABZR87_RS18770 at 565.540 kb on + strand, within ABZR87_RS18770 at 565.540 kb on + strand, within ABZR87_RS18770 at 565.541 kb on - strand, within ABZR87_RS18770 at 565.639 kb on + strand, within ABZR87_RS18770 at 565.660 kb on + strand, within ABZR87_RS18770 at 565.660 kb on + strand, within ABZR87_RS18770 at 565.661 kb on - strand, within ABZR87_RS18770 at 565.661 kb on - strand, within ABZR87_RS18770 at 565.661 kb on - strand, within ABZR87_RS18770 at 565.801 kb on + strand, within ABZR87_RS18770 at 565.801 kb on + strand, within ABZR87_RS18770 at 565.801 kb on + strand, within ABZR87_RS18770 at 565.801 kb on + strand, within ABZR87_RS18770 at 565.801 kb on + strand, within ABZR87_RS18770 at 565.802 kb on - strand, within ABZR87_RS18770 at 565.802 kb on - strand, within ABZR87_RS18770 at 565.802 kb on - strand, within ABZR87_RS18770 at 565.802 kb on - strand, within ABZR87_RS18770 at 565.871 kb on - strand, within ABZR87_RS18770 at 565.873 kb on + strand, within ABZR87_RS18770 at 565.873 kb on + strand, within ABZR87_RS18770 at 565.874 kb on - strand, within ABZR87_RS18770 at 565.894 kb on + strand, within ABZR87_RS18770 at 565.895 kb on - strand, within ABZR87_RS18770 at 565.969 kb on + strand at 565.969 kb on + strand at 565.970 kb on - strand at 565.970 kb on - strand at 565.970 kb on - strand at 565.970 kb on - strand at 565.990 kb on + strand at 565.990 kb on + strand at 565.990 kb on + strand at 565.990 kb on + strand at 565.990 kb on + strand at 565.990 kb on + strand at 565.991 kb on - strand at 566.041 kb on + strand at 566.041 kb on + strand at 566.041 kb on + strand at 566.041 kb on + strand at 566.041 kb on + strand at 566.041 kb on + strand at 566.042 kb on - strand at 566.042 kb on - strand at 566.139 kb on + strand at 566.142 kb on + strand, within ABZR87_RS18775 at 566.142 kb on + strand, within ABZR87_RS18775 at 566.142 kb on + strand, within ABZR87_RS18775 at 566.143 kb on - strand, within ABZR87_RS18775 at 566.151 kb on + strand, within ABZR87_RS18775 at 566.151 kb on + strand, within ABZR87_RS18775 at 566.151 kb on + strand, within ABZR87_RS18775 at 566.151 kb on + strand, within ABZR87_RS18775 at 566.152 kb on - strand, within ABZR87_RS18775 at 566.152 kb on - strand, within ABZR87_RS18775 at 566.152 kb on - strand, within ABZR87_RS18775 at 566.152 kb on - strand, within ABZR87_RS18775 at 566.152 kb on - strand, within ABZR87_RS18775 at 566.154 kb on + strand, within ABZR87_RS18775 at 566.154 kb on + strand, within ABZR87_RS18775 at 566.155 kb on - strand, within ABZR87_RS18775 at 566.155 kb on - strand, within ABZR87_RS18775 at 566.155 kb on - strand, within ABZR87_RS18775 at 566.169 kb on + strand, within ABZR87_RS18775 at 566.169 kb on + strand, within ABZR87_RS18775 at 566.169 kb on + strand, within ABZR87_RS18775 at 566.170 kb on - strand, within ABZR87_RS18775 at 566.170 kb on - strand, within ABZR87_RS18775 at 566.170 kb on - strand, within ABZR87_RS18775 at 566.173 kb on - strand, within ABZR87_RS18775 at 566.302 kb on + strand at 566.303 kb on - strand at 566.328 kb on + strand at 566.329 kb on - strand at 566.337 kb on + strand at 566.337 kb on + strand at 566.338 kb on - strand at 566.338 kb on - strand at 566.338 kb on - strand at 566.412 kb on + strand at 566.423 kb on + strand at 566.424 kb on - strand at 566.501 kb on + strand at 566.501 kb on + strand at 566.502 kb on - strand at 566.502 kb on - strand at 566.512 kb on + strand at 566.512 kb on + strand at 566.512 kb on + strand at 566.513 kb on - strand at 566.513 kb on - strand at 566.542 kb on + strand at 566.542 kb on + strand at 566.542 kb on + strand at 566.599 kb on + strand at 566.599 kb on + strand at 566.599 kb on + strand at 566.600 kb on - strand at 566.600 kb on - strand at 566.601 kb on + strand at 566.601 kb on + strand at 566.601 kb on + strand at 566.601 kb on + strand at 566.602 kb on - strand at 566.602 kb on - strand at 566.602 kb on - strand at 566.602 kb on - strand at 566.602 kb on - strand at 566.602 kb on - strand at 566.603 kb on + strand at 566.603 kb on + strand at 566.603 kb on + strand at 566.603 kb on + strand at 566.603 kb on + strand at 566.603 kb on + strand at 566.603 kb on + strand at 566.604 kb on - strand at 566.604 kb on - strand at 566.604 kb on - strand at 566.698 kb on + strand at 566.698 kb on + strand at 566.699 kb on - strand at 566.699 kb on - strand at 566.699 kb on - strand at 566.859 kb on + strand at 566.859 kb on + strand at 566.859 kb on + strand at 566.860 kb on - strand at 567.027 kb on + strand at 567.027 kb on + strand at 567.027 kb on + strand at 567.027 kb on + strand at 567.027 kb on + strand at 567.027 kb on + strand at 567.028 kb on - strand at 567.028 kb on - strand at 567.028 kb on - strand at 567.108 kb on + strand, within ABZR87_RS18785 at 567.108 kb on + strand, within ABZR87_RS18785 at 567.109 kb on - strand, within ABZR87_RS18785 at 567.158 kb on - strand, within ABZR87_RS18785 at 567.158 kb on - strand, within ABZR87_RS18785 at 567.199 kb on + strand, within ABZR87_RS18785 at 567.199 kb on + strand, within ABZR87_RS18785 at 567.199 kb on + strand, within ABZR87_RS18785 at 567.199 kb on + strand, within ABZR87_RS18785 at 567.199 kb on + strand, within ABZR87_RS18785 at 567.199 kb on + strand, within ABZR87_RS18785 at 567.199 kb on + strand, within ABZR87_RS18785 at 567.199 kb on + strand, within ABZR87_RS18785 at 567.199 kb on + strand, within ABZR87_RS18785 at 567.200 kb on - strand, within ABZR87_RS18785 at 567.200 kb on - strand, within ABZR87_RS18785 at 567.200 kb on - strand, within ABZR87_RS18785 at 567.200 kb on - strand, within ABZR87_RS18785 at 567.200 kb on - strand, within ABZR87_RS18785 at 567.200 kb on - strand, within ABZR87_RS18785 at 567.203 kb on + strand, within ABZR87_RS18785 at 567.203 kb on + strand, within ABZR87_RS18785 at 567.204 kb on - strand, within ABZR87_RS18785 at 567.204 kb on - strand, within ABZR87_RS18785 at 567.204 kb on - strand, within ABZR87_RS18785
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 565,141 + ABZR87_RS18770 0.44 +0.2 565,141 + ABZR87_RS18770 0.44 +0.5 565,141 + ABZR87_RS18770 0.44 -1.2 565,141 + ABZR87_RS18770 0.44 +1.0 565,141 + ABZR87_RS18770 0.44 -0.4 565,142 - ABZR87_RS18770 0.44 -0.5 565,142 - ABZR87_RS18770 0.44 +0.8 565,142 - ABZR87_RS18770 0.44 -0.3 565,142 - ABZR87_RS18770 0.44 +0.2 565,142 - ABZR87_RS18770 0.44 +0.7 565,204 + ABZR87_RS18770 0.48 -1.7 565,337 + ABZR87_RS18770 0.55 +0.5 565,338 - ABZR87_RS18770 0.55 +1.4 565,355 - ABZR87_RS18770 0.56 +0.7 565,418 - ABZR87_RS18770 0.60 -0.6 565,540 + ABZR87_RS18770 0.67 +0.3 565,540 + ABZR87_RS18770 0.67 -0.1 565,541 - ABZR87_RS18770 0.67 +0.1 565,639 + ABZR87_RS18770 0.73 -0.7 565,660 + ABZR87_RS18770 0.74 -0.8 565,660 + ABZR87_RS18770 0.74 +0.7 565,661 - ABZR87_RS18770 0.74 -0.1 565,661 - ABZR87_RS18770 0.74 -0.1 565,661 - ABZR87_RS18770 0.74 -0.9 565,801 + ABZR87_RS18770 0.82 +0.2 565,801 + ABZR87_RS18770 0.82 +0.2 565,801 + ABZR87_RS18770 0.82 -0.2 565,801 + ABZR87_RS18770 0.82 -0.6 565,801 + ABZR87_RS18770 0.82 -1.0 565,802 - ABZR87_RS18770 0.82 +1.0 565,802 - ABZR87_RS18770 0.82 +1.0 565,802 - ABZR87_RS18770 0.82 +1.4 565,802 - ABZR87_RS18770 0.82 +0.7 565,871 - ABZR87_RS18770 0.86 -1.0 565,873 + ABZR87_RS18770 0.86 +0.0 565,873 + ABZR87_RS18770 0.86 +0.7 565,874 - ABZR87_RS18770 0.86 +0.1 565,894 + ABZR87_RS18770 0.88 +0.7 565,895 - ABZR87_RS18770 0.88 -0.8 565,969 + +2.6 565,969 + +0.9 565,970 - +0.5 565,970 - +0.5 565,970 - -1.6 565,970 - -1.2 565,990 + +0.0 565,990 + -0.6 565,990 + -0.4 565,990 + -0.8 565,990 + -0.6 565,990 + -1.5 565,991 - -0.8 566,041 + -1.2 566,041 + -0.1 566,041 + -0.2 566,041 + +0.6 566,041 + -1.4 566,041 + +0.8 566,042 - -0.6 566,042 - -0.2 566,139 + -0.5 566,142 + ABZR87_RS18775 0.12 +0.1 566,142 + ABZR87_RS18775 0.12 -1.0 566,142 + ABZR87_RS18775 0.12 -0.8 566,143 - ABZR87_RS18775 0.13 +0.4 566,151 + ABZR87_RS18775 0.19 +0.5 566,151 + ABZR87_RS18775 0.19 +0.4 566,151 + ABZR87_RS18775 0.19 +0.6 566,151 + ABZR87_RS18775 0.19 -0.6 566,152 - ABZR87_RS18775 0.20 +0.6 566,152 - ABZR87_RS18775 0.20 +0.2 566,152 - ABZR87_RS18775 0.20 +0.5 566,152 - ABZR87_RS18775 0.20 +1.6 566,152 - ABZR87_RS18775 0.20 +1.1 566,154 + ABZR87_RS18775 0.21 -0.8 566,154 + ABZR87_RS18775 0.21 +1.0 566,155 - ABZR87_RS18775 0.22 -0.7 566,155 - ABZR87_RS18775 0.22 +0.1 566,155 - ABZR87_RS18775 0.22 +0.3 566,169 + ABZR87_RS18775 0.33 -0.5 566,169 + ABZR87_RS18775 0.33 -1.7 566,169 + ABZR87_RS18775 0.33 +1.6 566,170 - ABZR87_RS18775 0.33 +1.5 566,170 - ABZR87_RS18775 0.33 +0.3 566,170 - ABZR87_RS18775 0.33 +1.1 566,173 - ABZR87_RS18775 0.36 +0.0 566,302 + -3.1 566,303 - -0.3 566,328 + -0.3 566,329 - +0.9 566,337 + -1.3 566,337 + -2.4 566,338 - +0.3 566,338 - -0.7 566,338 - +0.5 566,412 + -0.1 566,423 + -0.5 566,424 - +0.1 566,501 + +2.2 566,501 + -0.1 566,502 - +0.4 566,502 - +0.6 566,512 + +0.3 566,512 + +1.6 566,512 + +0.4 566,513 - +0.6 566,513 - +0.0 566,542 + +0.0 566,542 + +0.4 566,542 + -0.6 566,599 + -0.3 566,599 + +0.9 566,599 + +0.0 566,600 - +0.2 566,600 - -2.6 566,601 + -0.5 566,601 + +1.6 566,601 + +0.3 566,601 + +0.1 566,602 - -2.6 566,602 - +2.0 566,602 - -0.2 566,602 - +0.1 566,602 - +0.8 566,602 - -0.4 566,603 + -0.3 566,603 + -0.1 566,603 + -0.0 566,603 + -0.6 566,603 + -0.2 566,603 + +0.4 566,603 + +0.0 566,604 - -1.6 566,604 - -0.0 566,604 - +0.6 566,698 + -2.8 566,698 + -0.4 566,699 - +0.9 566,699 - -0.6 566,699 - +0.4 566,859 + -0.3 566,859 + +1.2 566,859 + -0.1 566,860 - +1.6 567,027 + +1.1 567,027 + +0.8 567,027 + -0.5 567,027 + -0.9 567,027 + +0.2 567,027 + -1.1 567,028 - -0.1 567,028 - -1.0 567,028 - +0.8 567,108 + ABZR87_RS18785 0.16 -0.5 567,108 + ABZR87_RS18785 0.16 +0.2 567,109 - ABZR87_RS18785 0.16 -0.7 567,158 - ABZR87_RS18785 0.24 -0.5 567,158 - ABZR87_RS18785 0.24 -0.3 567,199 + ABZR87_RS18785 0.31 -0.2 567,199 + ABZR87_RS18785 0.31 +0.3 567,199 + ABZR87_RS18785 0.31 -0.3 567,199 + ABZR87_RS18785 0.31 -0.3 567,199 + ABZR87_RS18785 0.31 -0.8 567,199 + ABZR87_RS18785 0.31 -0.2 567,199 + ABZR87_RS18785 0.31 -0.4 567,199 + ABZR87_RS18785 0.31 -1.3 567,199 + ABZR87_RS18785 0.31 -0.5 567,200 - ABZR87_RS18785 0.31 +1.0 567,200 - ABZR87_RS18785 0.31 -0.5 567,200 - ABZR87_RS18785 0.31 +0.1 567,200 - ABZR87_RS18785 0.31 -0.7 567,200 - ABZR87_RS18785 0.31 +0.3 567,200 - ABZR87_RS18785 0.31 +0.2 567,203 + ABZR87_RS18785 0.31 -0.1 567,203 + ABZR87_RS18785 0.31 -0.5 567,204 - ABZR87_RS18785 0.32 -0.3 567,204 - ABZR87_RS18785 0.32 +0.6 567,204 - ABZR87_RS18785 0.32 +0.2
Or see this region's nucleotide sequence