Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18725 and ABZR87_RS18730 overlap by 4 nucleotides ABZR87_RS18730 and ABZR87_RS18735 are separated by 546 nucleotides
ABZR87_RS18725: ABZR87_RS18725 - sialidase family protein, at 553,793 to 555,046
_RS18725
ABZR87_RS18730: ABZR87_RS18730 - redoxin domain-containing protein, at 555,043 to 555,549
_RS18730
ABZR87_RS18735: ABZR87_RS18735 - sulfite exporter TauE/SafE family protein, at 556,096 to 556,854
_RS18735
Position (kb) 555
556 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 554.057 kb on + strand, within ABZR87_RS18725 at 554.057 kb on + strand, within ABZR87_RS18725 at 554.057 kb on + strand, within ABZR87_RS18725 at 554.057 kb on + strand, within ABZR87_RS18725 at 554.057 kb on + strand, within ABZR87_RS18725 at 554.057 kb on + strand, within ABZR87_RS18725 at 554.058 kb on - strand, within ABZR87_RS18725 at 554.058 kb on - strand, within ABZR87_RS18725 at 554.058 kb on - strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.112 kb on - strand, within ABZR87_RS18725 at 554.112 kb on - strand, within ABZR87_RS18725 at 554.112 kb on - strand, within ABZR87_RS18725 at 554.112 kb on - strand, within ABZR87_RS18725 at 554.112 kb on - strand, within ABZR87_RS18725 at 554.112 kb on - strand, within ABZR87_RS18725 at 554.144 kb on + strand, within ABZR87_RS18725 at 554.144 kb on + strand, within ABZR87_RS18725 at 554.144 kb on + strand, within ABZR87_RS18725 at 554.337 kb on - strand, within ABZR87_RS18725 at 554.354 kb on + strand, within ABZR87_RS18725 at 554.354 kb on + strand, within ABZR87_RS18725 at 554.354 kb on + strand, within ABZR87_RS18725 at 554.355 kb on - strand, within ABZR87_RS18725 at 554.357 kb on + strand, within ABZR87_RS18725 at 554.357 kb on + strand, within ABZR87_RS18725 at 554.357 kb on + strand, within ABZR87_RS18725 at 554.357 kb on + strand, within ABZR87_RS18725 at 554.357 kb on + strand, within ABZR87_RS18725 at 554.357 kb on + strand, within ABZR87_RS18725 at 554.358 kb on - strand, within ABZR87_RS18725 at 554.358 kb on - strand, within ABZR87_RS18725 at 554.358 kb on - strand, within ABZR87_RS18725 at 554.358 kb on - strand, within ABZR87_RS18725 at 554.358 kb on - strand, within ABZR87_RS18725 at 554.536 kb on + strand, within ABZR87_RS18725 at 554.537 kb on - strand, within ABZR87_RS18725 at 554.954 kb on + strand at 554.954 kb on + strand at 554.954 kb on + strand at 554.954 kb on + strand at 554.954 kb on + strand at 554.954 kb on + strand at 554.955 kb on - strand at 554.955 kb on - strand at 554.955 kb on - strand at 554.955 kb on - strand at 555.077 kb on + strand at 555.077 kb on + strand at 555.078 kb on - strand at 555.220 kb on + strand, within ABZR87_RS18730 at 555.221 kb on - strand, within ABZR87_RS18730 at 555.388 kb on + strand, within ABZR87_RS18730 at 555.389 kb on - strand, within ABZR87_RS18730 at 555.462 kb on + strand, within ABZR87_RS18730 at 555.462 kb on + strand, within ABZR87_RS18730 at 555.486 kb on + strand, within ABZR87_RS18730 at 555.486 kb on + strand, within ABZR87_RS18730 at 555.524 kb on + strand at 555.524 kb on + strand at 555.524 kb on + strand at 555.525 kb on - strand at 555.525 kb on - strand at 555.548 kb on - strand at 555.548 kb on - strand at 555.586 kb on - strand at 555.608 kb on + strand at 555.608 kb on + strand at 555.608 kb on + strand at 555.608 kb on + strand at 555.609 kb on - strand at 555.609 kb on - strand at 555.610 kb on + strand at 555.610 kb on + strand at 555.611 kb on - strand at 555.695 kb on + strand at 555.696 kb on - strand at 555.754 kb on + strand at 555.755 kb on - strand at 555.790 kb on + strand at 555.831 kb on + strand at 555.831 kb on + strand at 555.831 kb on + strand at 555.832 kb on - strand at 555.832 kb on - strand at 555.921 kb on + strand at 555.921 kb on + strand at 555.921 kb on + strand at 555.921 kb on + strand at 555.922 kb on - strand at 555.922 kb on - strand at 555.922 kb on - strand at 555.922 kb on - strand at 555.922 kb on - strand at 555.945 kb on - strand at 555.945 kb on - strand at 556.013 kb on + strand at 556.013 kb on + strand at 556.013 kb on + strand at 556.014 kb on - strand at 556.014 kb on - strand at 556.169 kb on + strand at 556.212 kb on - strand, within ABZR87_RS18735 at 556.410 kb on - strand, within ABZR87_RS18735 at 556.418 kb on + strand, within ABZR87_RS18735 at 556.418 kb on + strand, within ABZR87_RS18735 at 556.418 kb on + strand, within ABZR87_RS18735 at 556.418 kb on + strand, within ABZR87_RS18735 at 556.418 kb on + strand, within ABZR87_RS18735 at 556.418 kb on + strand, within ABZR87_RS18735 at 556.419 kb on - strand, within ABZR87_RS18735 at 556.419 kb on - strand, within ABZR87_RS18735 at 556.419 kb on - strand, within ABZR87_RS18735 at 556.419 kb on - strand, within ABZR87_RS18735 at 556.419 kb on - strand, within ABZR87_RS18735 at 556.419 kb on - strand, within ABZR87_RS18735 at 556.419 kb on - strand, within ABZR87_RS18735 at 556.419 kb on - strand, within ABZR87_RS18735
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 554,057 + ABZR87_RS18725 0.21 -0.8 554,057 + ABZR87_RS18725 0.21 +0.1 554,057 + ABZR87_RS18725 0.21 -0.5 554,057 + ABZR87_RS18725 0.21 +0.6 554,057 + ABZR87_RS18725 0.21 +1.6 554,057 + ABZR87_RS18725 0.21 +0.3 554,058 - ABZR87_RS18725 0.21 +0.5 554,058 - ABZR87_RS18725 0.21 +1.0 554,058 - ABZR87_RS18725 0.21 -0.4 554,111 + ABZR87_RS18725 0.25 +0.9 554,111 + ABZR87_RS18725 0.25 +0.3 554,111 + ABZR87_RS18725 0.25 +0.2 554,111 + ABZR87_RS18725 0.25 -0.8 554,111 + ABZR87_RS18725 0.25 -1.5 554,111 + ABZR87_RS18725 0.25 -0.2 554,111 + ABZR87_RS18725 0.25 +0.9 554,111 + ABZR87_RS18725 0.25 -0.3 554,111 + ABZR87_RS18725 0.25 +1.5 554,111 + ABZR87_RS18725 0.25 -1.6 554,112 - ABZR87_RS18725 0.25 +0.0 554,112 - ABZR87_RS18725 0.25 +0.1 554,112 - ABZR87_RS18725 0.25 +0.9 554,112 - ABZR87_RS18725 0.25 +0.1 554,112 - ABZR87_RS18725 0.25 +0.0 554,112 - ABZR87_RS18725 0.25 +0.7 554,144 + ABZR87_RS18725 0.28 +0.6 554,144 + ABZR87_RS18725 0.28 +1.6 554,144 + ABZR87_RS18725 0.28 +1.0 554,337 - ABZR87_RS18725 0.43 +2.0 554,354 + ABZR87_RS18725 0.45 -2.1 554,354 + ABZR87_RS18725 0.45 +1.1 554,354 + ABZR87_RS18725 0.45 -0.4 554,355 - ABZR87_RS18725 0.45 +1.1 554,357 + ABZR87_RS18725 0.45 +0.5 554,357 + ABZR87_RS18725 0.45 +0.4 554,357 + ABZR87_RS18725 0.45 -0.4 554,357 + ABZR87_RS18725 0.45 -1.3 554,357 + ABZR87_RS18725 0.45 -0.4 554,357 + ABZR87_RS18725 0.45 +0.9 554,358 - ABZR87_RS18725 0.45 -0.7 554,358 - ABZR87_RS18725 0.45 +0.7 554,358 - ABZR87_RS18725 0.45 -0.3 554,358 - ABZR87_RS18725 0.45 +0.1 554,358 - ABZR87_RS18725 0.45 +0.7 554,536 + ABZR87_RS18725 0.59 +0.0 554,537 - ABZR87_RS18725 0.59 +0.1 554,954 + -0.1 554,954 + -0.1 554,954 + -0.6 554,954 + -1.1 554,954 + -0.6 554,954 + +0.6 554,955 - +0.0 554,955 - +0.2 554,955 - -0.0 554,955 - +0.0 555,077 + -2.2 555,077 + -2.0 555,078 - -0.8 555,220 + ABZR87_RS18730 0.35 -0.7 555,221 - ABZR87_RS18730 0.35 +0.0 555,388 + ABZR87_RS18730 0.68 +0.2 555,389 - ABZR87_RS18730 0.68 -0.2 555,462 + ABZR87_RS18730 0.83 -2.6 555,462 + ABZR87_RS18730 0.83 -1.0 555,486 + ABZR87_RS18730 0.87 +1.0 555,486 + ABZR87_RS18730 0.87 -1.6 555,524 + -1.0 555,524 + -1.5 555,524 + -1.2 555,525 - -1.0 555,525 - -2.8 555,548 - -3.2 555,548 - -1.0 555,586 - -0.5 555,608 + -2.9 555,608 + +0.0 555,608 + -3.4 555,608 + +0.3 555,609 - -1.7 555,609 - -2.7 555,610 + -2.5 555,610 + -2.5 555,611 - -1.2 555,695 + -1.7 555,696 - -1.2 555,754 + -1.8 555,755 - -1.5 555,790 + +1.6 555,831 + -2.9 555,831 + -0.9 555,831 + -1.5 555,832 - -2.5 555,832 - -2.2 555,921 + -0.9 555,921 + -2.5 555,921 + -1.8 555,921 + -1.2 555,922 - -1.0 555,922 - -0.9 555,922 - -0.3 555,922 - -2.3 555,922 - -1.0 555,945 - -2.5 555,945 - -1.8 556,013 + -1.3 556,013 + -0.4 556,013 + -2.0 556,014 - -1.7 556,014 - -0.7 556,169 + +0.9 556,212 - ABZR87_RS18735 0.15 -0.1 556,410 - ABZR87_RS18735 0.41 -1.6 556,418 + ABZR87_RS18735 0.42 -0.3 556,418 + ABZR87_RS18735 0.42 -1.0 556,418 + ABZR87_RS18735 0.42 +0.1 556,418 + ABZR87_RS18735 0.42 +0.0 556,418 + ABZR87_RS18735 0.42 +0.4 556,418 + ABZR87_RS18735 0.42 +1.1 556,419 - ABZR87_RS18735 0.43 -0.6 556,419 - ABZR87_RS18735 0.43 -0.1 556,419 - ABZR87_RS18735 0.43 -0.6 556,419 - ABZR87_RS18735 0.43 -1.3 556,419 - ABZR87_RS18735 0.43 -0.3 556,419 - ABZR87_RS18735 0.43 -0.5 556,419 - ABZR87_RS18735 0.43 -1.7 556,419 - ABZR87_RS18735 0.43 -1.8
Or see this region's nucleotide sequence