Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18710 and ABZR87_RS18715 are separated by 198 nucleotides ABZR87_RS18715 and ABZR87_RS18720 are separated by 82 nucleotides ABZR87_RS18720 and ABZR87_RS18725 overlap by 1 nucleotides
ABZR87_RS18710: ABZR87_RS18710 - hypothetical protein, at 549,611 to 550,792
_RS18710
ABZR87_RS18715: ABZR87_RS18715 - DUF2946 domain-containing protein, at 550,991 to 551,392
_RS18715
ABZR87_RS18720: ABZR87_RS18720 - TonB-dependent receptor, at 551,475 to 553,793
_RS18720
ABZR87_RS18725: ABZR87_RS18725 - sialidase family protein, at 553,793 to 555,046
_RS18725
Position (kb) 551
552
553
554 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 550.580 kb on + strand, within ABZR87_RS18710 at 550.580 kb on + strand, within ABZR87_RS18710 at 550.580 kb on + strand, within ABZR87_RS18710 at 550.580 kb on + strand, within ABZR87_RS18710 at 550.580 kb on + strand, within ABZR87_RS18710 at 550.581 kb on - strand, within ABZR87_RS18710 at 550.581 kb on - strand, within ABZR87_RS18710 at 550.581 kb on - strand, within ABZR87_RS18710 at 550.590 kb on + strand, within ABZR87_RS18710 at 550.590 kb on + strand, within ABZR87_RS18710 at 550.590 kb on + strand, within ABZR87_RS18710 at 550.590 kb on + strand, within ABZR87_RS18710 at 550.590 kb on + strand, within ABZR87_RS18710 at 550.590 kb on + strand, within ABZR87_RS18710 at 550.590 kb on + strand, within ABZR87_RS18710 at 550.591 kb on - strand, within ABZR87_RS18710 at 550.591 kb on - strand, within ABZR87_RS18710 at 550.591 kb on - strand, within ABZR87_RS18710 at 550.591 kb on - strand, within ABZR87_RS18710 at 550.591 kb on - strand, within ABZR87_RS18710 at 550.591 kb on - strand, within ABZR87_RS18710 at 550.591 kb on - strand, within ABZR87_RS18710 at 550.591 kb on - strand, within ABZR87_RS18710 at 550.591 kb on - strand, within ABZR87_RS18710 at 550.591 kb on - strand, within ABZR87_RS18710 at 550.861 kb on - strand at 550.861 kb on - strand at 550.861 kb on - strand at 550.961 kb on - strand at 550.962 kb on + strand at 550.962 kb on + strand at 550.962 kb on + strand at 550.962 kb on + strand at 550.963 kb on - strand at 550.986 kb on + strand at 550.987 kb on - strand at 550.987 kb on - strand at 550.987 kb on - strand at 550.987 kb on - strand at 550.987 kb on - strand at 550.991 kb on - strand at 551.034 kb on + strand, within ABZR87_RS18715 at 551.035 kb on - strand, within ABZR87_RS18715 at 551.035 kb on - strand, within ABZR87_RS18715 at 551.035 kb on - strand, within ABZR87_RS18715 at 551.043 kb on + strand, within ABZR87_RS18715 at 551.043 kb on + strand, within ABZR87_RS18715 at 551.043 kb on + strand, within ABZR87_RS18715 at 551.044 kb on - strand, within ABZR87_RS18715 at 551.044 kb on - strand, within ABZR87_RS18715 at 551.044 kb on - strand, within ABZR87_RS18715 at 551.044 kb on - strand, within ABZR87_RS18715 at 551.045 kb on - strand, within ABZR87_RS18715 at 551.213 kb on + strand, within ABZR87_RS18715 at 551.213 kb on + strand, within ABZR87_RS18715 at 551.213 kb on + strand, within ABZR87_RS18715 at 551.214 kb on - strand, within ABZR87_RS18715 at 551.214 kb on - strand, within ABZR87_RS18715 at 551.288 kb on + strand, within ABZR87_RS18715 at 551.288 kb on + strand, within ABZR87_RS18715 at 551.288 kb on + strand, within ABZR87_RS18715 at 551.289 kb on - strand, within ABZR87_RS18715 at 551.289 kb on - strand, within ABZR87_RS18715 at 551.324 kb on + strand, within ABZR87_RS18715 at 551.325 kb on - strand, within ABZR87_RS18715 at 551.407 kb on + strand at 551.407 kb on + strand at 551.407 kb on + strand at 551.407 kb on + strand at 551.407 kb on + strand at 551.408 kb on - strand at 551.673 kb on - strand at 551.673 kb on - strand at 551.673 kb on - strand at 551.752 kb on - strand, within ABZR87_RS18720 at 551.752 kb on - strand, within ABZR87_RS18720 at 551.752 kb on - strand, within ABZR87_RS18720 at 551.853 kb on + strand, within ABZR87_RS18720 at 551.853 kb on + strand, within ABZR87_RS18720 at 551.853 kb on + strand, within ABZR87_RS18720 at 551.854 kb on - strand, within ABZR87_RS18720 at 551.854 kb on - strand, within ABZR87_RS18720 at 551.854 kb on - strand, within ABZR87_RS18720 at 551.854 kb on - strand, within ABZR87_RS18720 at 551.854 kb on - strand, within ABZR87_RS18720 at 551.895 kb on + strand, within ABZR87_RS18720 at 551.895 kb on + strand, within ABZR87_RS18720 at 551.896 kb on - strand, within ABZR87_RS18720 at 551.951 kb on + strand, within ABZR87_RS18720 at 551.952 kb on - strand, within ABZR87_RS18720 at 551.954 kb on + strand, within ABZR87_RS18720 at 551.958 kb on + strand, within ABZR87_RS18720 at 551.958 kb on + strand, within ABZR87_RS18720 at 551.958 kb on + strand, within ABZR87_RS18720 at 551.959 kb on - strand, within ABZR87_RS18720 at 552.075 kb on + strand, within ABZR87_RS18720 at 552.075 kb on + strand, within ABZR87_RS18720 at 552.076 kb on - strand, within ABZR87_RS18720 at 552.076 kb on - strand, within ABZR87_RS18720 at 552.087 kb on + strand, within ABZR87_RS18720 at 552.088 kb on - strand, within ABZR87_RS18720 at 552.159 kb on + strand, within ABZR87_RS18720 at 552.160 kb on - strand, within ABZR87_RS18720 at 552.160 kb on - strand, within ABZR87_RS18720 at 552.207 kb on + strand, within ABZR87_RS18720 at 552.207 kb on + strand, within ABZR87_RS18720 at 552.208 kb on - strand, within ABZR87_RS18720 at 552.208 kb on - strand, within ABZR87_RS18720 at 552.364 kb on - strand, within ABZR87_RS18720 at 552.364 kb on - strand, within ABZR87_RS18720 at 552.504 kb on + strand, within ABZR87_RS18720 at 552.505 kb on - strand, within ABZR87_RS18720 at 552.505 kb on - strand, within ABZR87_RS18720 at 552.505 kb on - strand, within ABZR87_RS18720 at 552.562 kb on - strand, within ABZR87_RS18720 at 552.602 kb on - strand, within ABZR87_RS18720 at 552.621 kb on + strand, within ABZR87_RS18720 at 552.621 kb on + strand, within ABZR87_RS18720 at 552.621 kb on + strand, within ABZR87_RS18720 at 552.690 kb on + strand, within ABZR87_RS18720 at 552.755 kb on + strand, within ABZR87_RS18720 at 552.755 kb on + strand, within ABZR87_RS18720 at 552.755 kb on + strand, within ABZR87_RS18720 at 552.755 kb on + strand, within ABZR87_RS18720 at 552.756 kb on - strand, within ABZR87_RS18720 at 552.756 kb on - strand, within ABZR87_RS18720 at 552.756 kb on - strand, within ABZR87_RS18720 at 552.756 kb on - strand, within ABZR87_RS18720 at 552.756 kb on - strand, within ABZR87_RS18720 at 552.778 kb on - strand, within ABZR87_RS18720 at 552.778 kb on - strand, within ABZR87_RS18720 at 552.786 kb on + strand, within ABZR87_RS18720 at 552.787 kb on - strand, within ABZR87_RS18720 at 552.787 kb on - strand, within ABZR87_RS18720 at 552.787 kb on - strand, within ABZR87_RS18720 at 552.787 kb on - strand, within ABZR87_RS18720 at 552.839 kb on - strand, within ABZR87_RS18720 at 552.963 kb on + strand, within ABZR87_RS18720 at 552.964 kb on - strand, within ABZR87_RS18720 at 553.241 kb on + strand, within ABZR87_RS18720 at 553.242 kb on - strand, within ABZR87_RS18720 at 553.242 kb on - strand, within ABZR87_RS18720 at 553.278 kb on + strand, within ABZR87_RS18720 at 553.278 kb on + strand, within ABZR87_RS18720 at 553.279 kb on - strand, within ABZR87_RS18720 at 553.279 kb on - strand, within ABZR87_RS18720 at 553.279 kb on - strand, within ABZR87_RS18720 at 553.365 kb on + strand, within ABZR87_RS18720 at 553.473 kb on + strand, within ABZR87_RS18720 at 553.473 kb on + strand, within ABZR87_RS18720 at 553.474 kb on - strand, within ABZR87_RS18720 at 553.626 kb on + strand at 553.627 kb on - strand at 553.671 kb on + strand at 553.676 kb on + strand at 553.732 kb on - strand at 553.740 kb on + strand at 553.741 kb on - strand at 553.767 kb on + strand at 553.767 kb on + strand at 553.768 kb on - strand at 553.768 kb on - strand at 553.768 kb on - strand at 553.768 kb on - strand at 553.768 kb on - strand at 553.768 kb on - strand at 553.768 kb on - strand at 553.791 kb on + strand at 553.791 kb on + strand at 553.791 kb on + strand at 553.792 kb on - strand at 553.792 kb on - strand at 553.792 kb on - strand at 554.057 kb on + strand, within ABZR87_RS18725 at 554.057 kb on + strand, within ABZR87_RS18725 at 554.057 kb on + strand, within ABZR87_RS18725 at 554.057 kb on + strand, within ABZR87_RS18725 at 554.057 kb on + strand, within ABZR87_RS18725 at 554.057 kb on + strand, within ABZR87_RS18725 at 554.058 kb on - strand, within ABZR87_RS18725 at 554.058 kb on - strand, within ABZR87_RS18725 at 554.058 kb on - strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.112 kb on - strand, within ABZR87_RS18725 at 554.112 kb on - strand, within ABZR87_RS18725 at 554.112 kb on - strand, within ABZR87_RS18725 at 554.112 kb on - strand, within ABZR87_RS18725 at 554.112 kb on - strand, within ABZR87_RS18725 at 554.112 kb on - strand, within ABZR87_RS18725 at 554.144 kb on + strand, within ABZR87_RS18725 at 554.144 kb on + strand, within ABZR87_RS18725 at 554.144 kb on + strand, within ABZR87_RS18725 at 554.337 kb on - strand, within ABZR87_RS18725 at 554.354 kb on + strand, within ABZR87_RS18725 at 554.354 kb on + strand, within ABZR87_RS18725 at 554.354 kb on + strand, within ABZR87_RS18725 at 554.355 kb on - strand, within ABZR87_RS18725 at 554.357 kb on + strand, within ABZR87_RS18725 at 554.357 kb on + strand, within ABZR87_RS18725 at 554.357 kb on + strand, within ABZR87_RS18725 at 554.357 kb on + strand, within ABZR87_RS18725 at 554.357 kb on + strand, within ABZR87_RS18725 at 554.357 kb on + strand, within ABZR87_RS18725 at 554.358 kb on - strand, within ABZR87_RS18725 at 554.358 kb on - strand, within ABZR87_RS18725 at 554.358 kb on - strand, within ABZR87_RS18725 at 554.358 kb on - strand, within ABZR87_RS18725 at 554.358 kb on - strand, within ABZR87_RS18725 at 554.536 kb on + strand, within ABZR87_RS18725 at 554.537 kb on - strand, within ABZR87_RS18725
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 550,580 + ABZR87_RS18710 0.82 +0.5 550,580 + ABZR87_RS18710 0.82 +0.3 550,580 + ABZR87_RS18710 0.82 +0.8 550,580 + ABZR87_RS18710 0.82 -1.4 550,580 + ABZR87_RS18710 0.82 -1.1 550,581 - ABZR87_RS18710 0.82 -1.5 550,581 - ABZR87_RS18710 0.82 +0.4 550,581 - ABZR87_RS18710 0.82 -1.7 550,590 + ABZR87_RS18710 0.83 -0.5 550,590 + ABZR87_RS18710 0.83 -0.6 550,590 + ABZR87_RS18710 0.83 +0.5 550,590 + ABZR87_RS18710 0.83 -0.8 550,590 + ABZR87_RS18710 0.83 -0.1 550,590 + ABZR87_RS18710 0.83 +0.1 550,590 + ABZR87_RS18710 0.83 +0.7 550,591 - ABZR87_RS18710 0.83 +0.6 550,591 - ABZR87_RS18710 0.83 +0.6 550,591 - ABZR87_RS18710 0.83 -0.3 550,591 - ABZR87_RS18710 0.83 -1.5 550,591 - ABZR87_RS18710 0.83 -0.3 550,591 - ABZR87_RS18710 0.83 +1.9 550,591 - ABZR87_RS18710 0.83 +1.0 550,591 - ABZR87_RS18710 0.83 -0.2 550,591 - ABZR87_RS18710 0.83 -0.1 550,591 - ABZR87_RS18710 0.83 -0.2 550,861 - +1.0 550,861 - +1.6 550,861 - +0.2 550,961 - +0.3 550,962 + +1.2 550,962 + +0.3 550,962 + -1.3 550,962 + +1.0 550,963 - +0.2 550,986 + -0.1 550,987 - -0.1 550,987 - -0.8 550,987 - -0.8 550,987 - +0.2 550,987 - +0.3 550,991 - -0.1 551,034 + ABZR87_RS18715 0.11 +0.4 551,035 - ABZR87_RS18715 0.11 -0.3 551,035 - ABZR87_RS18715 0.11 -0.2 551,035 - ABZR87_RS18715 0.11 -1.0 551,043 + ABZR87_RS18715 0.13 -1.3 551,043 + ABZR87_RS18715 0.13 -1.1 551,043 + ABZR87_RS18715 0.13 +0.6 551,044 - ABZR87_RS18715 0.13 +0.6 551,044 - ABZR87_RS18715 0.13 +1.1 551,044 - ABZR87_RS18715 0.13 +1.0 551,044 - ABZR87_RS18715 0.13 +0.7 551,045 - ABZR87_RS18715 0.13 +3.6 551,213 + ABZR87_RS18715 0.55 -0.2 551,213 + ABZR87_RS18715 0.55 +1.0 551,213 + ABZR87_RS18715 0.55 -0.4 551,214 - ABZR87_RS18715 0.55 +0.0 551,214 - ABZR87_RS18715 0.55 +0.3 551,288 + ABZR87_RS18715 0.74 +0.3 551,288 + ABZR87_RS18715 0.74 +0.0 551,288 + ABZR87_RS18715 0.74 -0.4 551,289 - ABZR87_RS18715 0.74 +0.6 551,289 - ABZR87_RS18715 0.74 +0.9 551,324 + ABZR87_RS18715 0.83 -0.8 551,325 - ABZR87_RS18715 0.83 +0.6 551,407 + -0.2 551,407 + -0.0 551,407 + -0.8 551,407 + -0.1 551,407 + +0.6 551,408 - +1.0 551,673 - -1.0 551,673 - +0.9 551,673 - -1.5 551,752 - ABZR87_RS18720 0.12 +1.2 551,752 - ABZR87_RS18720 0.12 -0.4 551,752 - ABZR87_RS18720 0.12 +0.1 551,853 + ABZR87_RS18720 0.16 +1.5 551,853 + ABZR87_RS18720 0.16 +0.2 551,853 + ABZR87_RS18720 0.16 -0.7 551,854 - ABZR87_RS18720 0.16 +1.2 551,854 - ABZR87_RS18720 0.16 -1.3 551,854 - ABZR87_RS18720 0.16 -1.3 551,854 - ABZR87_RS18720 0.16 +0.1 551,854 - ABZR87_RS18720 0.16 +2.0 551,895 + ABZR87_RS18720 0.18 -0.2 551,895 + ABZR87_RS18720 0.18 +1.0 551,896 - ABZR87_RS18720 0.18 -0.5 551,951 + ABZR87_RS18720 0.21 +0.5 551,952 - ABZR87_RS18720 0.21 +2.0 551,954 + ABZR87_RS18720 0.21 -1.5 551,958 + ABZR87_RS18720 0.21 +0.4 551,958 + ABZR87_RS18720 0.21 -1.9 551,958 + ABZR87_RS18720 0.21 -0.1 551,959 - ABZR87_RS18720 0.21 +1.1 552,075 + ABZR87_RS18720 0.26 +1.0 552,075 + ABZR87_RS18720 0.26 -1.2 552,076 - ABZR87_RS18720 0.26 +1.2 552,076 - ABZR87_RS18720 0.26 +1.8 552,087 + ABZR87_RS18720 0.26 +0.8 552,088 - ABZR87_RS18720 0.26 +0.5 552,159 + ABZR87_RS18720 0.29 +1.2 552,160 - ABZR87_RS18720 0.30 +0.6 552,160 - ABZR87_RS18720 0.30 +0.8 552,207 + ABZR87_RS18720 0.32 +0.5 552,207 + ABZR87_RS18720 0.32 +0.4 552,208 - ABZR87_RS18720 0.32 +0.3 552,208 - ABZR87_RS18720 0.32 +1.7 552,364 - ABZR87_RS18720 0.38 -0.4 552,364 - ABZR87_RS18720 0.38 -0.4 552,504 + ABZR87_RS18720 0.44 +0.0 552,505 - ABZR87_RS18720 0.44 -0.5 552,505 - ABZR87_RS18720 0.44 +0.7 552,505 - ABZR87_RS18720 0.44 -0.0 552,562 - ABZR87_RS18720 0.47 +0.8 552,602 - ABZR87_RS18720 0.49 -0.1 552,621 + ABZR87_RS18720 0.49 +0.6 552,621 + ABZR87_RS18720 0.49 -0.8 552,621 + ABZR87_RS18720 0.49 +0.1 552,690 + ABZR87_RS18720 0.52 -0.3 552,755 + ABZR87_RS18720 0.55 -0.7 552,755 + ABZR87_RS18720 0.55 +0.7 552,755 + ABZR87_RS18720 0.55 +0.5 552,755 + ABZR87_RS18720 0.55 +0.6 552,756 - ABZR87_RS18720 0.55 +0.8 552,756 - ABZR87_RS18720 0.55 +0.8 552,756 - ABZR87_RS18720 0.55 -0.8 552,756 - ABZR87_RS18720 0.55 +0.4 552,756 - ABZR87_RS18720 0.55 +1.2 552,778 - ABZR87_RS18720 0.56 -0.6 552,778 - ABZR87_RS18720 0.56 -1.2 552,786 + ABZR87_RS18720 0.57 +0.9 552,787 - ABZR87_RS18720 0.57 +0.6 552,787 - ABZR87_RS18720 0.57 -1.0 552,787 - ABZR87_RS18720 0.57 +0.2 552,787 - ABZR87_RS18720 0.57 -0.7 552,839 - ABZR87_RS18720 0.59 -1.0 552,963 + ABZR87_RS18720 0.64 -1.8 552,964 - ABZR87_RS18720 0.64 +0.4 553,241 + ABZR87_RS18720 0.76 -0.6 553,242 - ABZR87_RS18720 0.76 +2.9 553,242 - ABZR87_RS18720 0.76 +1.5 553,278 + ABZR87_RS18720 0.78 -0.4 553,278 + ABZR87_RS18720 0.78 -0.4 553,279 - ABZR87_RS18720 0.78 -0.9 553,279 - ABZR87_RS18720 0.78 +0.4 553,279 - ABZR87_RS18720 0.78 +0.4 553,365 + ABZR87_RS18720 0.82 +1.0 553,473 + ABZR87_RS18720 0.86 +0.5 553,473 + ABZR87_RS18720 0.86 -1.0 553,474 - ABZR87_RS18720 0.86 +2.6 553,626 + -0.0 553,627 - +0.9 553,671 + +0.0 553,676 + -0.1 553,732 - +0.3 553,740 + -0.2 553,741 - +0.3 553,767 + -1.2 553,767 + -0.6 553,768 - +0.8 553,768 - -0.2 553,768 - -0.7 553,768 - -0.7 553,768 - +0.5 553,768 - -0.7 553,768 - +0.0 553,791 + +1.6 553,791 + +0.5 553,791 + -0.2 553,792 - -0.5 553,792 - -0.2 553,792 - +0.7 554,057 + ABZR87_RS18725 0.21 -0.8 554,057 + ABZR87_RS18725 0.21 +0.1 554,057 + ABZR87_RS18725 0.21 -0.5 554,057 + ABZR87_RS18725 0.21 +0.6 554,057 + ABZR87_RS18725 0.21 +1.6 554,057 + ABZR87_RS18725 0.21 +0.3 554,058 - ABZR87_RS18725 0.21 +0.5 554,058 - ABZR87_RS18725 0.21 +1.0 554,058 - ABZR87_RS18725 0.21 -0.4 554,111 + ABZR87_RS18725 0.25 +0.9 554,111 + ABZR87_RS18725 0.25 +0.3 554,111 + ABZR87_RS18725 0.25 +0.2 554,111 + ABZR87_RS18725 0.25 -0.8 554,111 + ABZR87_RS18725 0.25 -1.5 554,111 + ABZR87_RS18725 0.25 -0.2 554,111 + ABZR87_RS18725 0.25 +0.9 554,111 + ABZR87_RS18725 0.25 -0.3 554,111 + ABZR87_RS18725 0.25 +1.5 554,111 + ABZR87_RS18725 0.25 -1.6 554,112 - ABZR87_RS18725 0.25 +0.0 554,112 - ABZR87_RS18725 0.25 +0.1 554,112 - ABZR87_RS18725 0.25 +0.9 554,112 - ABZR87_RS18725 0.25 +0.1 554,112 - ABZR87_RS18725 0.25 +0.0 554,112 - ABZR87_RS18725 0.25 +0.7 554,144 + ABZR87_RS18725 0.28 +0.6 554,144 + ABZR87_RS18725 0.28 +1.6 554,144 + ABZR87_RS18725 0.28 +1.0 554,337 - ABZR87_RS18725 0.43 +2.0 554,354 + ABZR87_RS18725 0.45 -2.1 554,354 + ABZR87_RS18725 0.45 +1.1 554,354 + ABZR87_RS18725 0.45 -0.4 554,355 - ABZR87_RS18725 0.45 +1.1 554,357 + ABZR87_RS18725 0.45 +0.5 554,357 + ABZR87_RS18725 0.45 +0.4 554,357 + ABZR87_RS18725 0.45 -0.4 554,357 + ABZR87_RS18725 0.45 -1.3 554,357 + ABZR87_RS18725 0.45 -0.4 554,357 + ABZR87_RS18725 0.45 +0.9 554,358 - ABZR87_RS18725 0.45 -0.7 554,358 - ABZR87_RS18725 0.45 +0.7 554,358 - ABZR87_RS18725 0.45 -0.3 554,358 - ABZR87_RS18725 0.45 +0.1 554,358 - ABZR87_RS18725 0.45 +0.7 554,536 + ABZR87_RS18725 0.59 +0.0 554,537 - ABZR87_RS18725 0.59 +0.1
Or see this region's nucleotide sequence