Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18435 and ABZR87_RS18440 overlap by 4 nucleotides ABZR87_RS18440 and ABZR87_RS18445 are separated by 8 nucleotides ABZR87_RS18445 and ABZR87_RS18450 overlap by 1 nucleotides ABZR87_RS18450 and ABZR87_RS18455 overlap by 8 nucleotides ABZR87_RS18455 and ABZR87_RS18460 are separated by 23 nucleotides
ABZR87_RS18435: ABZR87_RS18435 - 2-dehydropantoate 2-reductase, at 497,619 to 498,569
_RS18435
ABZR87_RS18440: ABZR87_RS18440 - VOC family protein, at 498,566 to 498,958
_RS18440
ABZR87_RS18445: ABZR87_RS18445 - MaoC family dehydratase, at 498,967 to 499,425
_RS18445
ABZR87_RS18450: ABZR87_RS18450 - CoA transferase, at 499,425 to 500,651
_RS18450
ABZR87_RS18455: ABZR87_RS18455 - shikimate dehydrogenase, at 500,644 to 501,477
_RS18455
ABZR87_RS18460: ABZR87_RS18460 - type II 3-dehydroquinate dehydratase, at 501,501 to 501,944
_RS18460
Position (kb) 499
500
501 Strain fitness (log2 ratio) -2
-1
0
1
2 at 498.584 kb on + strand at 498.585 kb on - strand at 498.701 kb on + strand, within ABZR87_RS18440 at 498.702 kb on - strand, within ABZR87_RS18440 at 498.853 kb on + strand, within ABZR87_RS18440 at 498.854 kb on - strand, within ABZR87_RS18440 at 499.030 kb on + strand, within ABZR87_RS18445 at 499.031 kb on - strand, within ABZR87_RS18445 at 499.060 kb on + strand, within ABZR87_RS18445 at 499.108 kb on + strand, within ABZR87_RS18445 at 499.108 kb on + strand, within ABZR87_RS18445 at 499.108 kb on + strand, within ABZR87_RS18445 at 499.464 kb on + strand at 499.489 kb on - strand at 499.489 kb on - strand at 499.603 kb on - strand, within ABZR87_RS18450 at 499.716 kb on + strand, within ABZR87_RS18450 at 499.717 kb on - strand, within ABZR87_RS18450 at 499.753 kb on - strand, within ABZR87_RS18450 at 499.789 kb on - strand, within ABZR87_RS18450 at 499.789 kb on - strand, within ABZR87_RS18450 at 499.938 kb on + strand, within ABZR87_RS18450 at 499.938 kb on + strand, within ABZR87_RS18450 at 499.938 kb on + strand, within ABZR87_RS18450 at 499.938 kb on + strand, within ABZR87_RS18450 at 499.939 kb on - strand, within ABZR87_RS18450 at 500.029 kb on - strand, within ABZR87_RS18450 at 500.029 kb on - strand, within ABZR87_RS18450 at 500.055 kb on + strand, within ABZR87_RS18450 at 500.056 kb on - strand, within ABZR87_RS18450 at 500.056 kb on - strand, within ABZR87_RS18450 at 500.070 kb on + strand, within ABZR87_RS18450 at 500.070 kb on + strand, within ABZR87_RS18450 at 500.070 kb on + strand, within ABZR87_RS18450 at 500.071 kb on - strand, within ABZR87_RS18450 at 500.130 kb on + strand, within ABZR87_RS18450 at 500.131 kb on - strand, within ABZR87_RS18450 at 500.626 kb on - strand at 500.626 kb on - strand at 500.657 kb on - strand at 500.743 kb on + strand, within ABZR87_RS18455 at 500.743 kb on + strand, within ABZR87_RS18455 at 500.743 kb on + strand, within ABZR87_RS18455 at 500.744 kb on - strand, within ABZR87_RS18455 at 500.744 kb on - strand, within ABZR87_RS18455 at 501.175 kb on + strand, within ABZR87_RS18455 at 501.293 kb on - strand, within ABZR87_RS18455 at 501.293 kb on - strand, within ABZR87_RS18455 at 501.304 kb on + strand, within ABZR87_RS18455 at 501.304 kb on + strand, within ABZR87_RS18455 at 501.305 kb on - strand, within ABZR87_RS18455
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 498,584 + +1.3 498,585 - -0.3 498,701 + ABZR87_RS18440 0.34 -1.1 498,702 - ABZR87_RS18440 0.35 +0.1 498,853 + ABZR87_RS18440 0.73 +1.7 498,854 - ABZR87_RS18440 0.73 +0.4 499,030 + ABZR87_RS18445 0.14 -0.4 499,031 - ABZR87_RS18445 0.14 +0.6 499,060 + ABZR87_RS18445 0.20 +1.1 499,108 + ABZR87_RS18445 0.31 -1.1 499,108 + ABZR87_RS18445 0.31 -0.2 499,108 + ABZR87_RS18445 0.31 +0.4 499,464 + +1.1 499,489 - -1.3 499,489 - +0.3 499,603 - ABZR87_RS18450 0.15 +2.6 499,716 + ABZR87_RS18450 0.24 -0.7 499,717 - ABZR87_RS18450 0.24 +0.1 499,753 - ABZR87_RS18450 0.27 -0.0 499,789 - ABZR87_RS18450 0.30 +0.9 499,789 - ABZR87_RS18450 0.30 -0.4 499,938 + ABZR87_RS18450 0.42 -1.1 499,938 + ABZR87_RS18450 0.42 -1.4 499,938 + ABZR87_RS18450 0.42 +0.2 499,938 + ABZR87_RS18450 0.42 -0.4 499,939 - ABZR87_RS18450 0.42 -0.6 500,029 - ABZR87_RS18450 0.49 -0.3 500,029 - ABZR87_RS18450 0.49 +0.8 500,055 + ABZR87_RS18450 0.51 -2.3 500,056 - ABZR87_RS18450 0.51 -1.2 500,056 - ABZR87_RS18450 0.51 +0.1 500,070 + ABZR87_RS18450 0.53 -0.9 500,070 + ABZR87_RS18450 0.53 -0.4 500,070 + ABZR87_RS18450 0.53 +0.3 500,071 - ABZR87_RS18450 0.53 -0.7 500,130 + ABZR87_RS18450 0.57 +0.5 500,131 - ABZR87_RS18450 0.58 +0.2 500,626 - -0.2 500,626 - -1.1 500,657 - -0.2 500,743 + ABZR87_RS18455 0.12 +0.4 500,743 + ABZR87_RS18455 0.12 -1.2 500,743 + ABZR87_RS18455 0.12 -0.0 500,744 - ABZR87_RS18455 0.12 +0.3 500,744 - ABZR87_RS18455 0.12 -1.0 501,175 + ABZR87_RS18455 0.64 -0.4 501,293 - ABZR87_RS18455 0.78 -2.5 501,293 - ABZR87_RS18455 0.78 -0.5 501,304 + ABZR87_RS18455 0.79 -1.0 501,304 + ABZR87_RS18455 0.79 -0.4 501,305 - ABZR87_RS18455 0.79 -2.2
Or see this region's nucleotide sequence