Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18435 and ABZR87_RS18440 overlap by 4 nucleotides ABZR87_RS18440 and ABZR87_RS18445 are separated by 8 nucleotides ABZR87_RS18445 and ABZR87_RS18450 overlap by 1 nucleotides
ABZR87_RS18435: ABZR87_RS18435 - 2-dehydropantoate 2-reductase, at 497,619 to 498,569
_RS18435
ABZR87_RS18440: ABZR87_RS18440 - VOC family protein, at 498,566 to 498,958
_RS18440
ABZR87_RS18445: ABZR87_RS18445 - MaoC family dehydratase, at 498,967 to 499,425
_RS18445
ABZR87_RS18450: ABZR87_RS18450 - CoA transferase, at 499,425 to 500,651
_RS18450
Position (kb) 498
499
500 Strain fitness (log2 ratio) -2
-1
0
1
2 at 497.994 kb on + strand, within ABZR87_RS18435 at 497.994 kb on + strand, within ABZR87_RS18435 at 497.994 kb on + strand, within ABZR87_RS18435 at 497.994 kb on + strand, within ABZR87_RS18435 at 497.995 kb on - strand, within ABZR87_RS18435 at 497.995 kb on - strand, within ABZR87_RS18435 at 498.026 kb on + strand, within ABZR87_RS18435 at 498.026 kb on + strand, within ABZR87_RS18435 at 498.026 kb on + strand, within ABZR87_RS18435 at 498.026 kb on + strand, within ABZR87_RS18435 at 498.027 kb on - strand, within ABZR87_RS18435 at 498.057 kb on + strand, within ABZR87_RS18435 at 498.058 kb on - strand, within ABZR87_RS18435 at 498.058 kb on - strand, within ABZR87_RS18435 at 498.058 kb on - strand, within ABZR87_RS18435 at 498.228 kb on + strand, within ABZR87_RS18435 at 498.229 kb on - strand, within ABZR87_RS18435 at 498.229 kb on - strand, within ABZR87_RS18435 at 498.241 kb on - strand, within ABZR87_RS18435 at 498.584 kb on + strand at 498.585 kb on - strand at 498.701 kb on + strand, within ABZR87_RS18440 at 498.702 kb on - strand, within ABZR87_RS18440 at 498.853 kb on + strand, within ABZR87_RS18440 at 498.854 kb on - strand, within ABZR87_RS18440 at 499.030 kb on + strand, within ABZR87_RS18445 at 499.031 kb on - strand, within ABZR87_RS18445 at 499.060 kb on + strand, within ABZR87_RS18445 at 499.108 kb on + strand, within ABZR87_RS18445 at 499.108 kb on + strand, within ABZR87_RS18445 at 499.108 kb on + strand, within ABZR87_RS18445 at 499.464 kb on + strand at 499.489 kb on - strand at 499.489 kb on - strand at 499.603 kb on - strand, within ABZR87_RS18450 at 499.716 kb on + strand, within ABZR87_RS18450 at 499.717 kb on - strand, within ABZR87_RS18450 at 499.753 kb on - strand, within ABZR87_RS18450 at 499.789 kb on - strand, within ABZR87_RS18450 at 499.789 kb on - strand, within ABZR87_RS18450 at 499.938 kb on + strand, within ABZR87_RS18450 at 499.938 kb on + strand, within ABZR87_RS18450 at 499.938 kb on + strand, within ABZR87_RS18450 at 499.938 kb on + strand, within ABZR87_RS18450 at 499.939 kb on - strand, within ABZR87_RS18450 at 500.029 kb on - strand, within ABZR87_RS18450 at 500.029 kb on - strand, within ABZR87_RS18450 at 500.055 kb on + strand, within ABZR87_RS18450 at 500.056 kb on - strand, within ABZR87_RS18450 at 500.056 kb on - strand, within ABZR87_RS18450 at 500.070 kb on + strand, within ABZR87_RS18450 at 500.070 kb on + strand, within ABZR87_RS18450 at 500.070 kb on + strand, within ABZR87_RS18450 at 500.071 kb on - strand, within ABZR87_RS18450 at 500.130 kb on + strand, within ABZR87_RS18450 at 500.131 kb on - strand, within ABZR87_RS18450
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 497,994 + ABZR87_RS18435 0.39 -0.7 497,994 + ABZR87_RS18435 0.39 +0.6 497,994 + ABZR87_RS18435 0.39 -1.2 497,994 + ABZR87_RS18435 0.39 -0.4 497,995 - ABZR87_RS18435 0.40 +0.3 497,995 - ABZR87_RS18435 0.40 +0.3 498,026 + ABZR87_RS18435 0.43 +0.3 498,026 + ABZR87_RS18435 0.43 -0.1 498,026 + ABZR87_RS18435 0.43 -0.6 498,026 + ABZR87_RS18435 0.43 -0.9 498,027 - ABZR87_RS18435 0.43 +0.2 498,057 + ABZR87_RS18435 0.46 -0.7 498,058 - ABZR87_RS18435 0.46 -0.7 498,058 - ABZR87_RS18435 0.46 -0.6 498,058 - ABZR87_RS18435 0.46 -0.1 498,228 + ABZR87_RS18435 0.64 +0.1 498,229 - ABZR87_RS18435 0.64 +2.1 498,229 - ABZR87_RS18435 0.64 -0.8 498,241 - ABZR87_RS18435 0.65 -0.7 498,584 + +1.3 498,585 - -0.3 498,701 + ABZR87_RS18440 0.34 -1.1 498,702 - ABZR87_RS18440 0.35 +0.1 498,853 + ABZR87_RS18440 0.73 +1.7 498,854 - ABZR87_RS18440 0.73 +0.4 499,030 + ABZR87_RS18445 0.14 -0.4 499,031 - ABZR87_RS18445 0.14 +0.6 499,060 + ABZR87_RS18445 0.20 +1.1 499,108 + ABZR87_RS18445 0.31 -1.1 499,108 + ABZR87_RS18445 0.31 -0.2 499,108 + ABZR87_RS18445 0.31 +0.4 499,464 + +1.1 499,489 - -1.3 499,489 - +0.3 499,603 - ABZR87_RS18450 0.15 +2.6 499,716 + ABZR87_RS18450 0.24 -0.7 499,717 - ABZR87_RS18450 0.24 +0.1 499,753 - ABZR87_RS18450 0.27 -0.0 499,789 - ABZR87_RS18450 0.30 +0.9 499,789 - ABZR87_RS18450 0.30 -0.4 499,938 + ABZR87_RS18450 0.42 -1.1 499,938 + ABZR87_RS18450 0.42 -1.4 499,938 + ABZR87_RS18450 0.42 +0.2 499,938 + ABZR87_RS18450 0.42 -0.4 499,939 - ABZR87_RS18450 0.42 -0.6 500,029 - ABZR87_RS18450 0.49 -0.3 500,029 - ABZR87_RS18450 0.49 +0.8 500,055 + ABZR87_RS18450 0.51 -2.3 500,056 - ABZR87_RS18450 0.51 -1.2 500,056 - ABZR87_RS18450 0.51 +0.1 500,070 + ABZR87_RS18450 0.53 -0.9 500,070 + ABZR87_RS18450 0.53 -0.4 500,070 + ABZR87_RS18450 0.53 +0.3 500,071 - ABZR87_RS18450 0.53 -0.7 500,130 + ABZR87_RS18450 0.57 +0.5 500,131 - ABZR87_RS18450 0.58 +0.2
Or see this region's nucleotide sequence