Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18395 and ABZR87_RS18400 are separated by 60 nucleotides ABZR87_RS18400 and ABZR87_RS18405 are separated by 49 nucleotides ABZR87_RS18405 and ABZR87_RS18410 are separated by 81 nucleotides ABZR87_RS18410 and ABZR87_RS18415 are separated by 713 nucleotides
ABZR87_RS18395: ABZR87_RS18395 - lysophospholipid acyltransferase family protein, at 492,847 to 493,725
_RS18395
ABZR87_RS18400: ABZR87_RS18400 - hypothetical protein, at 493,786 to 494,007
_RS18400
ABZR87_RS18405: ABZR87_RS18405 - hypothetical protein, at 494,057 to 494,311
_RS18405
ABZR87_RS18410: ABZR87_RS18410 - hypothetical protein, at 494,393 to 494,626
_RS18410
ABZR87_RS18415: ABZR87_RS18415 - hypothetical protein, at 495,340 to 495,666
_RS18415
Position (kb) 494
495 Strain fitness (log2 ratio) -2
-1
0
1 at 493.610 kb on + strand, within ABZR87_RS18395 at 493.611 kb on - strand, within ABZR87_RS18395 at 493.611 kb on - strand, within ABZR87_RS18395 at 493.611 kb on - strand, within ABZR87_RS18395 at 493.788 kb on - strand at 493.844 kb on + strand, within ABZR87_RS18400 at 493.845 kb on - strand, within ABZR87_RS18400 at 494.026 kb on + strand at 494.026 kb on + strand at 494.058 kb on + strand at 494.059 kb on - strand at 494.059 kb on - strand at 494.082 kb on + strand at 494.082 kb on + strand at 494.083 kb on - strand, within ABZR87_RS18405 at 494.094 kb on - strand, within ABZR87_RS18405 at 494.134 kb on + strand, within ABZR87_RS18405 at 494.134 kb on + strand, within ABZR87_RS18405 at 494.134 kb on + strand, within ABZR87_RS18405 at 494.135 kb on - strand, within ABZR87_RS18405 at 494.247 kb on + strand, within ABZR87_RS18405 at 494.247 kb on + strand, within ABZR87_RS18405 at 494.248 kb on - strand, within ABZR87_RS18405 at 494.248 kb on - strand, within ABZR87_RS18405 at 494.305 kb on + strand at 494.305 kb on + strand at 494.305 kb on + strand at 494.305 kb on + strand at 494.306 kb on - strand at 494.488 kb on + strand, within ABZR87_RS18410 at 494.489 kb on - strand, within ABZR87_RS18410 at 494.489 kb on - strand, within ABZR87_RS18410 at 494.507 kb on - strand, within ABZR87_RS18410 at 494.551 kb on - strand, within ABZR87_RS18410 at 494.551 kb on - strand, within ABZR87_RS18410 at 494.551 kb on - strand, within ABZR87_RS18410 at 494.589 kb on + strand, within ABZR87_RS18410 at 494.589 kb on + strand, within ABZR87_RS18410 at 494.604 kb on + strand at 494.702 kb on - strand at 494.715 kb on + strand at 494.781 kb on + strand at 494.782 kb on - strand at 494.782 kb on - strand at 494.801 kb on + strand at 494.802 kb on - strand at 494.802 kb on - strand at 494.804 kb on + strand at 494.804 kb on + strand at 494.805 kb on - strand at 494.805 kb on - strand at 494.846 kb on + strand at 494.846 kb on + strand at 494.847 kb on - strand at 494.847 kb on - strand at 494.884 kb on - strand at 494.884 kb on - strand at 494.910 kb on + strand at 494.911 kb on - strand at 494.911 kb on - strand at 494.972 kb on + strand at 494.972 kb on + strand at 494.986 kb on - strand at 495.127 kb on + strand at 495.127 kb on + strand at 495.127 kb on + strand at 495.186 kb on + strand at 495.186 kb on + strand at 495.187 kb on - strand at 495.321 kb on + strand at 495.321 kb on + strand at 495.321 kb on + strand at 495.322 kb on - strand at 495.360 kb on + strand at 495.385 kb on - strand, within ABZR87_RS18415 at 495.489 kb on + strand, within ABZR87_RS18415
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 493,610 + ABZR87_RS18395 0.87 +0.6 493,611 - ABZR87_RS18395 0.87 +0.6 493,611 - ABZR87_RS18395 0.87 -0.3 493,611 - ABZR87_RS18395 0.87 -2.0 493,788 - -1.2 493,844 + ABZR87_RS18400 0.26 -0.5 493,845 - ABZR87_RS18400 0.27 -2.3 494,026 + -0.0 494,026 + -0.7 494,058 + +0.1 494,059 - +0.1 494,059 - +0.4 494,082 + -0.4 494,082 + +0.8 494,083 - ABZR87_RS18405 0.10 +1.6 494,094 - ABZR87_RS18405 0.15 -2.7 494,134 + ABZR87_RS18405 0.30 +1.6 494,134 + ABZR87_RS18405 0.30 +0.5 494,134 + ABZR87_RS18405 0.30 +0.3 494,135 - ABZR87_RS18405 0.31 -1.3 494,247 + ABZR87_RS18405 0.75 +0.7 494,247 + ABZR87_RS18405 0.75 +0.6 494,248 - ABZR87_RS18405 0.75 +1.0 494,248 - ABZR87_RS18405 0.75 +0.6 494,305 + -0.2 494,305 + +0.1 494,305 + -0.3 494,305 + +0.3 494,306 - -0.3 494,488 + ABZR87_RS18410 0.41 -0.6 494,489 - ABZR87_RS18410 0.41 -0.1 494,489 - ABZR87_RS18410 0.41 -0.1 494,507 - ABZR87_RS18410 0.49 +0.2 494,551 - ABZR87_RS18410 0.68 +0.2 494,551 - ABZR87_RS18410 0.68 -0.2 494,551 - ABZR87_RS18410 0.68 -0.0 494,589 + ABZR87_RS18410 0.84 +1.2 494,589 + ABZR87_RS18410 0.84 +0.4 494,604 + -0.7 494,702 - -0.4 494,715 + +0.1 494,781 + -0.1 494,782 - +0.0 494,782 - -1.3 494,801 + -0.5 494,802 - -0.6 494,802 - -0.1 494,804 + +0.3 494,804 + -0.1 494,805 - -0.3 494,805 - +0.2 494,846 + +0.1 494,846 + +0.2 494,847 - +0.2 494,847 - -0.8 494,884 - +0.9 494,884 - +1.5 494,910 + -0.2 494,911 - -1.1 494,911 - +1.6 494,972 + -0.7 494,972 + +0.2 494,986 - +0.1 495,127 + +0.6 495,127 + -0.6 495,127 + +0.1 495,186 + +1.0 495,186 + +0.4 495,187 - -1.1 495,321 + +1.1 495,321 + -0.9 495,321 + +0.5 495,322 - -1.7 495,360 + +1.0 495,385 - ABZR87_RS18415 0.14 -0.6 495,489 + ABZR87_RS18415 0.46 +0.0
Or see this region's nucleotide sequence