Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18085 and ABZR87_RS18090 overlap by 4 nucleotides ABZR87_RS18090 and ABZR87_RS18095 overlap by 19 nucleotides ABZR87_RS18095 and ABZR87_RS18100 are separated by 8 nucleotides
ABZR87_RS18085: ABZR87_RS18085 - type III secretion system ATPase SctN, at 422,209 to 423,633
_RS18085
ABZR87_RS18090: ABZR87_RS18090 - type III secretion system stator protein SctL, at 423,630 to 424,244
_RS18090
ABZR87_RS18095: ABZR87_RS18095 - hypothetical protein, at 424,226 to 424,900
_RS18095
ABZR87_RS18100: ABZR87_RS18100 - type III secretion system inner membrane ring lipoprotein SctJ, at 424,909 to 425,730
_RS18100
Position (kb) 423
424
425 Strain fitness (log2 ratio) -2
-1
0
1 at 422.636 kb on + strand, within ABZR87_RS18085 at 422.637 kb on - strand, within ABZR87_RS18085 at 422.637 kb on - strand, within ABZR87_RS18085 at 422.831 kb on + strand, within ABZR87_RS18085 at 422.832 kb on - strand, within ABZR87_RS18085 at 422.832 kb on - strand, within ABZR87_RS18085 at 422.832 kb on - strand, within ABZR87_RS18085 at 423.180 kb on - strand, within ABZR87_RS18085 at 423.378 kb on - strand, within ABZR87_RS18085 at 423.562 kb on + strand at 423.563 kb on - strand at 423.563 kb on - strand at 423.571 kb on + strand at 423.572 kb on - strand at 423.572 kb on - strand at 423.850 kb on + strand, within ABZR87_RS18090 at 424.012 kb on + strand, within ABZR87_RS18090 at 424.012 kb on + strand, within ABZR87_RS18090 at 424.013 kb on - strand, within ABZR87_RS18090 at 424.013 kb on - strand, within ABZR87_RS18090 at 424.013 kb on - strand, within ABZR87_RS18090 at 424.085 kb on - strand, within ABZR87_RS18090 at 424.168 kb on + strand, within ABZR87_RS18090 at 424.464 kb on + strand, within ABZR87_RS18095 at 424.631 kb on + strand, within ABZR87_RS18095 at 424.632 kb on - strand, within ABZR87_RS18095 at 424.632 kb on - strand, within ABZR87_RS18095 at 424.632 kb on - strand, within ABZR87_RS18095 at 424.632 kb on - strand, within ABZR87_RS18095 at 425.026 kb on + strand, within ABZR87_RS18100 at 425.026 kb on + strand, within ABZR87_RS18100 at 425.090 kb on + strand, within ABZR87_RS18100 at 425.169 kb on - strand, within ABZR87_RS18100
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 422,636 + ABZR87_RS18085 0.30 -1.0 422,637 - ABZR87_RS18085 0.30 +0.0 422,637 - ABZR87_RS18085 0.30 -0.4 422,831 + ABZR87_RS18085 0.44 -1.1 422,832 - ABZR87_RS18085 0.44 -1.8 422,832 - ABZR87_RS18085 0.44 +0.1 422,832 - ABZR87_RS18085 0.44 -0.7 423,180 - ABZR87_RS18085 0.68 +0.1 423,378 - ABZR87_RS18085 0.82 -0.7 423,562 + -0.3 423,563 - -0.8 423,563 - +0.5 423,571 + -0.2 423,572 - -0.8 423,572 - -1.8 423,850 + ABZR87_RS18090 0.36 -0.1 424,012 + ABZR87_RS18090 0.62 -0.1 424,012 + ABZR87_RS18090 0.62 -0.0 424,013 - ABZR87_RS18090 0.62 -0.0 424,013 - ABZR87_RS18090 0.62 -0.2 424,013 - ABZR87_RS18090 0.62 -1.5 424,085 - ABZR87_RS18090 0.74 +1.3 424,168 + ABZR87_RS18090 0.87 -0.7 424,464 + ABZR87_RS18095 0.35 -0.2 424,631 + ABZR87_RS18095 0.60 +0.2 424,632 - ABZR87_RS18095 0.60 +0.3 424,632 - ABZR87_RS18095 0.60 +1.6 424,632 - ABZR87_RS18095 0.60 -0.1 424,632 - ABZR87_RS18095 0.60 -0.2 425,026 + ABZR87_RS18100 0.14 -0.2 425,026 + ABZR87_RS18100 0.14 -0.9 425,090 + ABZR87_RS18100 0.22 -0.4 425,169 - ABZR87_RS18100 0.32 +0.3
Or see this region's nucleotide sequence