Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18070 and ABZR87_RS18075 overlap by 4 nucleotides ABZR87_RS18075 and ABZR87_RS18080 overlap by 4 nucleotides ABZR87_RS18080 and ABZR87_RS18085 overlap by 38 nucleotides
ABZR87_RS18070: ABZR87_RS18070 - EscU/YscU/HrcU family type III secretion system export apparatus switch protein, at 419,897 to 420,940
_RS18070
ABZR87_RS18075: ABZR87_RS18075 - type III secretion system export apparatus subunit SctT, at 420,937 to 421,737
_RS18075
ABZR87_RS18080: ABZR87_RS18080 - hypothetical protein, at 421,734 to 422,246
_RS18080
ABZR87_RS18085: ABZR87_RS18085 - type III secretion system ATPase SctN, at 422,209 to 423,633
_RS18085
Position (kb) 421
422
423 Strain fitness (log2 ratio) -2
-1
0
1 at 420.838 kb on + strand at 420.839 kb on - strand at 420.839 kb on - strand at 420.854 kb on + strand at 420.855 kb on - strand at 421.022 kb on + strand, within ABZR87_RS18075 at 421.022 kb on + strand, within ABZR87_RS18075 at 421.023 kb on - strand, within ABZR87_RS18075 at 421.023 kb on - strand, within ABZR87_RS18075 at 421.023 kb on - strand, within ABZR87_RS18075 at 421.023 kb on - strand, within ABZR87_RS18075 at 421.440 kb on - strand, within ABZR87_RS18075 at 421.994 kb on + strand, within ABZR87_RS18080 at 421.995 kb on - strand, within ABZR87_RS18080 at 422.018 kb on - strand, within ABZR87_RS18080 at 422.180 kb on + strand, within ABZR87_RS18080 at 422.254 kb on + strand at 422.254 kb on + strand at 422.255 kb on - strand at 422.255 kb on - strand at 422.384 kb on + strand, within ABZR87_RS18085 at 422.384 kb on + strand, within ABZR87_RS18085 at 422.384 kb on + strand, within ABZR87_RS18085 at 422.385 kb on - strand, within ABZR87_RS18085 at 422.385 kb on - strand, within ABZR87_RS18085 at 422.385 kb on - strand, within ABZR87_RS18085 at 422.526 kb on - strand, within ABZR87_RS18085 at 422.623 kb on + strand, within ABZR87_RS18085 at 422.624 kb on - strand, within ABZR87_RS18085 at 422.636 kb on + strand, within ABZR87_RS18085 at 422.637 kb on - strand, within ABZR87_RS18085 at 422.637 kb on - strand, within ABZR87_RS18085 at 422.831 kb on + strand, within ABZR87_RS18085 at 422.832 kb on - strand, within ABZR87_RS18085 at 422.832 kb on - strand, within ABZR87_RS18085 at 422.832 kb on - strand, within ABZR87_RS18085 at 423.180 kb on - strand, within ABZR87_RS18085
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 420,838 + +1.6 420,839 - +0.3 420,839 - +0.6 420,854 + -0.8 420,855 - +0.4 421,022 + ABZR87_RS18075 0.11 +0.0 421,022 + ABZR87_RS18075 0.11 +0.8 421,023 - ABZR87_RS18075 0.11 +0.3 421,023 - ABZR87_RS18075 0.11 -0.8 421,023 - ABZR87_RS18075 0.11 -0.0 421,023 - ABZR87_RS18075 0.11 -2.0 421,440 - ABZR87_RS18075 0.63 +0.1 421,994 + ABZR87_RS18080 0.51 -2.4 421,995 - ABZR87_RS18080 0.51 -1.8 422,018 - ABZR87_RS18080 0.55 +1.6 422,180 + ABZR87_RS18080 0.87 -0.9 422,254 + -0.1 422,254 + +0.2 422,255 - -0.8 422,255 - -1.6 422,384 + ABZR87_RS18085 0.12 -0.9 422,384 + ABZR87_RS18085 0.12 -0.1 422,384 + ABZR87_RS18085 0.12 +1.3 422,385 - ABZR87_RS18085 0.12 +1.5 422,385 - ABZR87_RS18085 0.12 -0.2 422,385 - ABZR87_RS18085 0.12 -0.6 422,526 - ABZR87_RS18085 0.22 -0.2 422,623 + ABZR87_RS18085 0.29 -0.1 422,624 - ABZR87_RS18085 0.29 +0.7 422,636 + ABZR87_RS18085 0.30 -1.0 422,637 - ABZR87_RS18085 0.30 +0.0 422,637 - ABZR87_RS18085 0.30 -0.4 422,831 + ABZR87_RS18085 0.44 -1.1 422,832 - ABZR87_RS18085 0.44 -1.8 422,832 - ABZR87_RS18085 0.44 +0.1 422,832 - ABZR87_RS18085 0.44 -0.7 423,180 - ABZR87_RS18085 0.68 +0.1
Or see this region's nucleotide sequence