Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18065 and ABZR87_RS18070 are separated by 296 nucleotides ABZR87_RS18070 and ABZR87_RS18075 overlap by 4 nucleotides ABZR87_RS18075 and ABZR87_RS18080 overlap by 4 nucleotides
ABZR87_RS18065: ABZR87_RS18065 - LuxR family transcriptional regulator, at 418,698 to 419,600
_RS18065
ABZR87_RS18070: ABZR87_RS18070 - EscU/YscU/HrcU family type III secretion system export apparatus switch protein, at 419,897 to 420,940
_RS18070
ABZR87_RS18075: ABZR87_RS18075 - type III secretion system export apparatus subunit SctT, at 420,937 to 421,737
_RS18075
ABZR87_RS18080: ABZR87_RS18080 - hypothetical protein, at 421,734 to 422,246
_RS18080
Position (kb) 419
420
421 Strain fitness (log2 ratio) -2
-1
0
1 at 419.272 kb on + strand, within ABZR87_RS18065 at 419.272 kb on + strand, within ABZR87_RS18065 at 419.273 kb on - strand, within ABZR87_RS18065 at 419.273 kb on - strand, within ABZR87_RS18065 at 419.273 kb on - strand, within ABZR87_RS18065 at 419.329 kb on + strand, within ABZR87_RS18065 at 419.330 kb on - strand, within ABZR87_RS18065 at 419.330 kb on - strand, within ABZR87_RS18065 at 419.330 kb on - strand, within ABZR87_RS18065 at 419.796 kb on + strand at 419.797 kb on - strand at 420.145 kb on - strand, within ABZR87_RS18070 at 420.156 kb on + strand, within ABZR87_RS18070 at 420.157 kb on - strand, within ABZR87_RS18070 at 420.312 kb on + strand, within ABZR87_RS18070 at 420.312 kb on + strand, within ABZR87_RS18070 at 420.312 kb on + strand, within ABZR87_RS18070 at 420.313 kb on - strand, within ABZR87_RS18070 at 420.313 kb on - strand, within ABZR87_RS18070 at 420.334 kb on - strand, within ABZR87_RS18070 at 420.334 kb on - strand, within ABZR87_RS18070 at 420.334 kb on - strand, within ABZR87_RS18070 at 420.350 kb on + strand, within ABZR87_RS18070 at 420.350 kb on + strand, within ABZR87_RS18070 at 420.838 kb on + strand at 420.839 kb on - strand at 420.839 kb on - strand at 420.854 kb on + strand at 420.855 kb on - strand at 421.022 kb on + strand, within ABZR87_RS18075 at 421.022 kb on + strand, within ABZR87_RS18075 at 421.023 kb on - strand, within ABZR87_RS18075 at 421.023 kb on - strand, within ABZR87_RS18075 at 421.023 kb on - strand, within ABZR87_RS18075 at 421.023 kb on - strand, within ABZR87_RS18075 at 421.440 kb on - strand, within ABZR87_RS18075
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 419,272 + ABZR87_RS18065 0.64 +0.1 419,272 + ABZR87_RS18065 0.64 +0.4 419,273 - ABZR87_RS18065 0.64 -1.2 419,273 - ABZR87_RS18065 0.64 -1.3 419,273 - ABZR87_RS18065 0.64 -2.1 419,329 + ABZR87_RS18065 0.70 -0.0 419,330 - ABZR87_RS18065 0.70 -1.1 419,330 - ABZR87_RS18065 0.70 -0.5 419,330 - ABZR87_RS18065 0.70 -2.1 419,796 + +0.6 419,797 - -0.5 420,145 - ABZR87_RS18070 0.24 -2.3 420,156 + ABZR87_RS18070 0.25 +1.0 420,157 - ABZR87_RS18070 0.25 -0.3 420,312 + ABZR87_RS18070 0.40 -0.6 420,312 + ABZR87_RS18070 0.40 -0.5 420,312 + ABZR87_RS18070 0.40 +0.0 420,313 - ABZR87_RS18070 0.40 +1.3 420,313 - ABZR87_RS18070 0.40 -0.7 420,334 - ABZR87_RS18070 0.42 -0.6 420,334 - ABZR87_RS18070 0.42 +1.5 420,334 - ABZR87_RS18070 0.42 -0.2 420,350 + ABZR87_RS18070 0.43 +1.4 420,350 + ABZR87_RS18070 0.43 +0.0 420,838 + +1.6 420,839 - +0.3 420,839 - +0.6 420,854 + -0.8 420,855 - +0.4 421,022 + ABZR87_RS18075 0.11 +0.0 421,022 + ABZR87_RS18075 0.11 +0.8 421,023 - ABZR87_RS18075 0.11 +0.3 421,023 - ABZR87_RS18075 0.11 -0.8 421,023 - ABZR87_RS18075 0.11 -0.0 421,023 - ABZR87_RS18075 0.11 -2.0 421,440 - ABZR87_RS18075 0.63 +0.1
Or see this region's nucleotide sequence