Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18060 and ABZR87_RS18065 are separated by 230 nucleotides ABZR87_RS18065 and ABZR87_RS18070 are separated by 296 nucleotides
ABZR87_RS18060: ABZR87_RS18060 - LysM domain-containing protein, at 408,088 to 418,467
_RS18060
ABZR87_RS18065: ABZR87_RS18065 - LuxR family transcriptional regulator, at 418,698 to 419,600
_RS18065
ABZR87_RS18070: ABZR87_RS18070 - EscU/YscU/HrcU family type III secretion system export apparatus switch protein, at 419,897 to 420,940
_RS18070
Position (kb)
418
419
420 Strain fitness (log2 ratio)
-2
-1
0
1 at 417.728 kb on + strand at 417.728 kb on + strand at 417.729 kb on - strand at 417.729 kb on - strand at 417.996 kb on + strand at 418.061 kb on + strand at 418.215 kb on - strand at 418.238 kb on + strand at 418.238 kb on + strand at 418.239 kb on - strand at 418.391 kb on + strand at 418.391 kb on + strand at 418.429 kb on - strand at 418.480 kb on + strand at 418.481 kb on - strand at 418.481 kb on - strand at 418.622 kb on - strand at 418.622 kb on - strand at 418.632 kb on - strand at 418.649 kb on + strand at 418.649 kb on + strand at 418.649 kb on + strand at 418.649 kb on + strand at 418.649 kb on + strand at 418.650 kb on - strand at 418.650 kb on - strand at 419.272 kb on + strand, within ABZR87_RS18065 at 419.272 kb on + strand, within ABZR87_RS18065 at 419.273 kb on - strand, within ABZR87_RS18065 at 419.273 kb on - strand, within ABZR87_RS18065 at 419.273 kb on - strand, within ABZR87_RS18065 at 419.329 kb on + strand, within ABZR87_RS18065 at 419.330 kb on - strand, within ABZR87_RS18065 at 419.330 kb on - strand, within ABZR87_RS18065 at 419.330 kb on - strand, within ABZR87_RS18065 at 419.796 kb on + strand at 419.797 kb on - strand at 420.145 kb on - strand, within ABZR87_RS18070 at 420.156 kb on + strand, within ABZR87_RS18070 at 420.157 kb on - strand, within ABZR87_RS18070 at 420.312 kb on + strand, within ABZR87_RS18070 at 420.312 kb on + strand, within ABZR87_RS18070 at 420.312 kb on + strand, within ABZR87_RS18070 at 420.313 kb on - strand, within ABZR87_RS18070 at 420.313 kb on - strand, within ABZR87_RS18070 at 420.334 kb on - strand, within ABZR87_RS18070 at 420.334 kb on - strand, within ABZR87_RS18070 at 420.334 kb on - strand, within ABZR87_RS18070 at 420.350 kb on + strand, within ABZR87_RS18070 at 420.350 kb on + strand, within ABZR87_RS18070
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 417,728 + -0.2 417,728 + -1.8 417,729 - -0.1 417,729 - -0.8 417,996 + -1.6 418,061 + +0.4 418,215 - -0.7 418,238 + +0.9 418,238 + +1.5 418,239 - -0.6 418,391 + -0.1 418,391 + +0.0 418,429 - -1.4 418,480 + -1.1 418,481 - -0.5 418,481 - -1.0 418,622 - +1.2 418,622 - +0.8 418,632 - -0.8 418,649 + +0.5 418,649 + -0.3 418,649 + +0.1 418,649 + -1.0 418,649 + +0.5 418,650 - +0.7 418,650 - +0.2 419,272 + ABZR87_RS18065 0.64 +0.1 419,272 + ABZR87_RS18065 0.64 +0.4 419,273 - ABZR87_RS18065 0.64 -1.2 419,273 - ABZR87_RS18065 0.64 -1.3 419,273 - ABZR87_RS18065 0.64 -2.1 419,329 + ABZR87_RS18065 0.70 -0.0 419,330 - ABZR87_RS18065 0.70 -1.1 419,330 - ABZR87_RS18065 0.70 -0.5 419,330 - ABZR87_RS18065 0.70 -2.1 419,796 + +0.6 419,797 - -0.5 420,145 - ABZR87_RS18070 0.24 -2.3 420,156 + ABZR87_RS18070 0.25 +1.0 420,157 - ABZR87_RS18070 0.25 -0.3 420,312 + ABZR87_RS18070 0.40 -0.6 420,312 + ABZR87_RS18070 0.40 -0.5 420,312 + ABZR87_RS18070 0.40 +0.0 420,313 - ABZR87_RS18070 0.40 +1.3 420,313 - ABZR87_RS18070 0.40 -0.7 420,334 - ABZR87_RS18070 0.42 -0.6 420,334 - ABZR87_RS18070 0.42 +1.5 420,334 - ABZR87_RS18070 0.42 -0.2 420,350 + ABZR87_RS18070 0.43 +1.4 420,350 + ABZR87_RS18070 0.43 +0.0
Or see this region's nucleotide sequence