Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17980 and ABZR87_RS17985 are separated by 89 nucleotides ABZR87_RS17985 and ABZR87_RS17990 are separated by 139 nucleotides
ABZR87_RS17980: ABZR87_RS17980 - CheR family methyltransferase, at 389,792 to 390,670
_RS17980
ABZR87_RS17985: ABZR87_RS17985 - chemoreceptor glutamine deamidase CheD, at 390,760 to 391,377
_RS17985
ABZR87_RS17990: ABZR87_RS17990 - chemotaxis response regulator protein-glutamate methylesterase, at 391,517 to 392,638
_RS17990
Position (kb) 390
391
392 Strain fitness (log2 ratio) -2
-1
0
1
2 at 389.776 kb on + strand at 389.776 kb on + strand at 389.784 kb on - strand at 389.787 kb on + strand at 389.787 kb on + strand at 389.787 kb on + strand at 389.787 kb on + strand at 389.787 kb on + strand at 389.787 kb on + strand at 389.787 kb on + strand at 389.787 kb on + strand at 389.787 kb on + strand at 389.787 kb on + strand at 389.787 kb on + strand at 389.787 kb on + strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.788 kb on - strand at 389.791 kb on + strand at 389.791 kb on + strand at 389.791 kb on + strand at 389.791 kb on + strand at 389.791 kb on + strand at 389.792 kb on - strand at 389.792 kb on - strand at 389.792 kb on - strand at 389.792 kb on - strand at 389.792 kb on - strand at 389.899 kb on + strand, within ABZR87_RS17980 at 389.899 kb on + strand, within ABZR87_RS17980 at 389.900 kb on - strand, within ABZR87_RS17980 at 389.933 kb on + strand, within ABZR87_RS17980 at 389.934 kb on - strand, within ABZR87_RS17980 at 389.934 kb on - strand, within ABZR87_RS17980 at 389.987 kb on + strand, within ABZR87_RS17980 at 390.037 kb on + strand, within ABZR87_RS17980 at 390.038 kb on - strand, within ABZR87_RS17980 at 390.038 kb on - strand, within ABZR87_RS17980 at 390.253 kb on + strand, within ABZR87_RS17980 at 390.254 kb on - strand, within ABZR87_RS17980 at 390.287 kb on + strand, within ABZR87_RS17980 at 390.287 kb on + strand, within ABZR87_RS17980 at 390.288 kb on - strand, within ABZR87_RS17980 at 390.335 kb on + strand, within ABZR87_RS17980 at 390.368 kb on + strand, within ABZR87_RS17980 at 390.368 kb on + strand, within ABZR87_RS17980 at 390.369 kb on - strand, within ABZR87_RS17980 at 390.369 kb on - strand, within ABZR87_RS17980 at 390.488 kb on + strand, within ABZR87_RS17980 at 390.489 kb on - strand, within ABZR87_RS17980 at 390.626 kb on + strand at 390.799 kb on + strand at 390.800 kb on - strand at 390.800 kb on - strand at 390.803 kb on - strand at 390.803 kb on - strand at 390.850 kb on + strand, within ABZR87_RS17985 at 390.850 kb on + strand, within ABZR87_RS17985 at 390.850 kb on + strand, within ABZR87_RS17985 at 390.851 kb on - strand, within ABZR87_RS17985 at 391.045 kb on + strand, within ABZR87_RS17985 at 391.045 kb on + strand, within ABZR87_RS17985 at 391.045 kb on + strand, within ABZR87_RS17985 at 391.045 kb on + strand, within ABZR87_RS17985 at 391.045 kb on + strand, within ABZR87_RS17985 at 391.045 kb on + strand, within ABZR87_RS17985 at 391.046 kb on - strand, within ABZR87_RS17985 at 391.046 kb on - strand, within ABZR87_RS17985 at 391.046 kb on - strand, within ABZR87_RS17985 at 391.119 kb on + strand, within ABZR87_RS17985 at 391.120 kb on - strand, within ABZR87_RS17985 at 391.228 kb on + strand, within ABZR87_RS17985 at 391.228 kb on + strand, within ABZR87_RS17985 at 391.228 kb on + strand, within ABZR87_RS17985 at 391.313 kb on - strand, within ABZR87_RS17985 at 391.313 kb on - strand, within ABZR87_RS17985 at 391.376 kb on - strand at 391.376 kb on - strand at 391.376 kb on - strand at 391.376 kb on - strand at 391.376 kb on - strand at 391.432 kb on + strand at 391.433 kb on - strand at 391.433 kb on - strand at 392.261 kb on + strand, within ABZR87_RS17990 at 392.262 kb on - strand, within ABZR87_RS17990 at 392.262 kb on - strand, within ABZR87_RS17990 at 392.312 kb on + strand, within ABZR87_RS17990 at 392.312 kb on + strand, within ABZR87_RS17990 at 392.313 kb on - strand, within ABZR87_RS17990 at 392.313 kb on - strand, within ABZR87_RS17990 at 392.313 kb on - strand, within ABZR87_RS17990 at 392.313 kb on - strand, within ABZR87_RS17990 at 392.313 kb on - strand, within ABZR87_RS17990
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 389,776 + +1.1 389,776 + +0.1 389,784 - -0.4 389,787 + +0.6 389,787 + +0.5 389,787 + -0.3 389,787 + +1.6 389,787 + -0.6 389,787 + -0.3 389,787 + +0.1 389,787 + -0.3 389,787 + -0.5 389,787 + +0.5 389,787 + -0.7 389,787 + +0.8 389,788 - +0.7 389,788 - +0.3 389,788 - -0.6 389,788 - -0.2 389,788 - -1.1 389,788 - +0.5 389,788 - -0.8 389,788 - -0.7 389,788 - +0.1 389,788 - +2.6 389,788 - +1.6 389,788 - +0.8 389,788 - +1.0 389,788 - -0.7 389,788 - -0.5 389,788 - +0.5 389,788 - +0.4 389,788 - +1.8 389,791 + +0.8 389,791 + +1.1 389,791 + +0.0 389,791 + +0.8 389,791 + +0.3 389,792 - -0.3 389,792 - -0.0 389,792 - -0.5 389,792 - -1.2 389,792 - -0.4 389,899 + ABZR87_RS17980 0.12 -0.2 389,899 + ABZR87_RS17980 0.12 +0.1 389,900 - ABZR87_RS17980 0.12 -0.4 389,933 + ABZR87_RS17980 0.16 +0.5 389,934 - ABZR87_RS17980 0.16 -0.8 389,934 - ABZR87_RS17980 0.16 -0.2 389,987 + ABZR87_RS17980 0.22 +0.3 390,037 + ABZR87_RS17980 0.28 -1.0 390,038 - ABZR87_RS17980 0.28 -1.1 390,038 - ABZR87_RS17980 0.28 +0.7 390,253 + ABZR87_RS17980 0.52 +0.1 390,254 - ABZR87_RS17980 0.53 +2.6 390,287 + ABZR87_RS17980 0.56 -0.6 390,287 + ABZR87_RS17980 0.56 -1.9 390,288 - ABZR87_RS17980 0.56 -0.7 390,335 + ABZR87_RS17980 0.62 -0.6 390,368 + ABZR87_RS17980 0.66 +1.1 390,368 + ABZR87_RS17980 0.66 -1.5 390,369 - ABZR87_RS17980 0.66 -1.5 390,369 - ABZR87_RS17980 0.66 -1.2 390,488 + ABZR87_RS17980 0.79 +0.3 390,489 - ABZR87_RS17980 0.79 +0.1 390,626 + -0.9 390,799 + +0.0 390,800 - +0.6 390,800 - -0.8 390,803 - +0.4 390,803 - -0.3 390,850 + ABZR87_RS17985 0.15 +0.1 390,850 + ABZR87_RS17985 0.15 -0.5 390,850 + ABZR87_RS17985 0.15 +0.4 390,851 - ABZR87_RS17985 0.15 -1.8 391,045 + ABZR87_RS17985 0.46 -1.5 391,045 + ABZR87_RS17985 0.46 +0.6 391,045 + ABZR87_RS17985 0.46 -2.1 391,045 + ABZR87_RS17985 0.46 -0.2 391,045 + ABZR87_RS17985 0.46 +1.6 391,045 + ABZR87_RS17985 0.46 -1.6 391,046 - ABZR87_RS17985 0.46 +0.1 391,046 - ABZR87_RS17985 0.46 +0.0 391,046 - ABZR87_RS17985 0.46 -0.8 391,119 + ABZR87_RS17985 0.58 +0.7 391,120 - ABZR87_RS17985 0.58 -0.8 391,228 + ABZR87_RS17985 0.76 -0.9 391,228 + ABZR87_RS17985 0.76 -0.3 391,228 + ABZR87_RS17985 0.76 -0.9 391,313 - ABZR87_RS17985 0.89 -0.0 391,313 - ABZR87_RS17985 0.89 +0.2 391,376 - -2.0 391,376 - +0.2 391,376 - +0.1 391,376 - +0.2 391,376 - -0.4 391,432 + +0.3 391,433 - -1.5 391,433 - -0.8 392,261 + ABZR87_RS17990 0.66 -0.9 392,262 - ABZR87_RS17990 0.66 -2.0 392,262 - ABZR87_RS17990 0.66 +1.1 392,312 + ABZR87_RS17990 0.71 -0.6 392,312 + ABZR87_RS17990 0.71 -0.8 392,313 - ABZR87_RS17990 0.71 -1.0 392,313 - ABZR87_RS17990 0.71 +1.1 392,313 - ABZR87_RS17990 0.71 +0.1 392,313 - ABZR87_RS17990 0.71 -0.5 392,313 - ABZR87_RS17990 0.71 -2.2
Or see this region's nucleotide sequence