Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17940

Experiment: Ra1_0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS17930 and ABZR87_RS17935 are separated by 76 nucleotidesABZR87_RS17935 and ABZR87_RS17940 are separated by 71 nucleotidesABZR87_RS17940 and ABZR87_RS17945 are separated by 107 nucleotides ABZR87_RS17930: ABZR87_RS17930 - flagellar transcriptional regulator FlhD, at 378,977 to 379,294 _RS17930 ABZR87_RS17935: ABZR87_RS17935 - flagellar transcriptional regulator FlhC, at 379,371 to 379,931 _RS17935 ABZR87_RS17940: ABZR87_RS17940 - hypothetical protein, at 380,003 to 380,374 _RS17940 ABZR87_RS17945: ABZR87_RS17945 - flagellar motor stator protein MotA, at 380,482 to 381,342 _RS17945 Position (kb) 380 381Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 379.025 kb on + strand, within ABZR87_RS17930at 379.025 kb on + strand, within ABZR87_RS17930at 379.025 kb on + strand, within ABZR87_RS17930at 379.025 kb on + strand, within ABZR87_RS17930at 379.025 kb on + strand, within ABZR87_RS17930at 379.026 kb on - strand, within ABZR87_RS17930at 379.026 kb on - strand, within ABZR87_RS17930at 379.026 kb on - strand, within ABZR87_RS17930at 379.026 kb on - strand, within ABZR87_RS17930at 379.346 kb on + strandat 379.346 kb on + strandat 379.346 kb on + strandat 379.346 kb on + strandat 379.346 kb on + strandat 379.347 kb on - strandat 379.347 kb on - strandat 379.347 kb on - strandat 379.500 kb on + strand, within ABZR87_RS17935at 379.500 kb on + strand, within ABZR87_RS17935at 379.500 kb on + strand, within ABZR87_RS17935at 379.501 kb on - strand, within ABZR87_RS17935at 379.501 kb on - strand, within ABZR87_RS17935at 379.608 kb on + strand, within ABZR87_RS17935at 379.608 kb on + strand, within ABZR87_RS17935at 379.609 kb on - strand, within ABZR87_RS17935at 379.665 kb on + strand, within ABZR87_RS17935at 379.665 kb on + strand, within ABZR87_RS17935at 379.675 kb on - strand, within ABZR87_RS17935at 379.932 kb on + strandat 379.933 kb on - strandat 379.965 kb on + strandat 379.965 kb on + strandat 379.966 kb on - strandat 379.966 kb on - strandat 379.966 kb on - strandat 379.966 kb on - strandat 379.974 kb on - strandat 380.025 kb on + strandat 380.026 kb on - strandat 380.026 kb on - strandat 380.031 kb on + strandat 380.037 kb on + strandat 380.043 kb on - strand, within ABZR87_RS17940at 380.047 kb on - strand, within ABZR87_RS17940at 380.062 kb on + strand, within ABZR87_RS17940at 380.082 kb on + strand, within ABZR87_RS17940at 380.082 kb on + strand, within ABZR87_RS17940at 380.082 kb on + strand, within ABZR87_RS17940at 380.082 kb on + strand, within ABZR87_RS17940at 380.082 kb on + strand, within ABZR87_RS17940at 380.082 kb on + strand, within ABZR87_RS17940at 380.082 kb on + strand, within ABZR87_RS17940at 380.082 kb on + strand, within ABZR87_RS17940at 380.082 kb on + strand, within ABZR87_RS17940at 380.082 kb on + strand, within ABZR87_RS17940at 380.082 kb on + strand, within ABZR87_RS17940at 380.082 kb on + strand, within ABZR87_RS17940at 380.082 kb on + strand, within ABZR87_RS17940at 380.082 kb on + strand, within ABZR87_RS17940at 380.082 kb on + strand, within ABZR87_RS17940at 380.083 kb on - strand, within ABZR87_RS17940at 380.083 kb on - strand, within ABZR87_RS17940at 380.083 kb on - strand, within ABZR87_RS17940at 380.083 kb on - strand, within ABZR87_RS17940at 380.083 kb on - strand, within ABZR87_RS17940at 380.083 kb on - strand, within ABZR87_RS17940at 380.083 kb on - strand, within ABZR87_RS17940at 380.083 kb on - strand, within ABZR87_RS17940at 380.083 kb on - strand, within ABZR87_RS17940at 380.088 kb on + strand, within ABZR87_RS17940at 380.088 kb on + strand, within ABZR87_RS17940at 380.088 kb on + strand, within ABZR87_RS17940at 380.088 kb on + strand, within ABZR87_RS17940at 380.088 kb on + strand, within ABZR87_RS17940at 380.088 kb on + strand, within ABZR87_RS17940at 380.088 kb on + strand, within ABZR87_RS17940at 380.088 kb on + strand, within ABZR87_RS17940at 380.089 kb on - strand, within ABZR87_RS17940at 380.089 kb on - strand, within ABZR87_RS17940at 380.089 kb on - strand, within ABZR87_RS17940at 380.089 kb on - strand, within ABZR87_RS17940at 380.089 kb on - strand, within ABZR87_RS17940at 380.089 kb on - strand, within ABZR87_RS17940at 380.089 kb on - strand, within ABZR87_RS17940at 380.212 kb on + strand, within ABZR87_RS17940at 380.212 kb on + strand, within ABZR87_RS17940at 380.213 kb on - strand, within ABZR87_RS17940at 380.213 kb on - strand, within ABZR87_RS17940at 380.213 kb on - strand, within ABZR87_RS17940at 380.371 kb on - strandat 380.433 kb on + strandat 380.445 kb on + strandat 380.445 kb on + strandat 380.445 kb on + strandat 380.446 kb on - strandat 380.446 kb on - strandat 380.446 kb on - strandat 380.486 kb on + strandat 380.486 kb on + strandat 380.487 kb on - strandat 380.500 kb on + strandat 380.501 kb on - strandat 380.533 kb on + strandat 380.533 kb on + strandat 380.533 kb on + strandat 380.533 kb on + strandat 380.533 kb on + strandat 380.533 kb on + strandat 380.534 kb on - strandat 380.534 kb on - strandat 380.704 kb on + strand, within ABZR87_RS17945at 380.704 kb on + strand, within ABZR87_RS17945at 380.704 kb on + strand, within ABZR87_RS17945at 380.704 kb on + strand, within ABZR87_RS17945at 380.704 kb on + strand, within ABZR87_RS17945at 380.704 kb on + strand, within ABZR87_RS17945at 380.705 kb on - strand, within ABZR87_RS17945at 380.705 kb on - strand, within ABZR87_RS17945at 380.705 kb on - strand, within ABZR87_RS17945at 380.705 kb on - strand, within ABZR87_RS17945at 380.705 kb on - strand, within ABZR87_RS17945at 380.705 kb on - strand, within ABZR87_RS17945at 380.705 kb on - strand, within ABZR87_RS17945at 380.706 kb on + strand, within ABZR87_RS17945at 380.706 kb on + strand, within ABZR87_RS17945at 380.707 kb on - strand, within ABZR87_RS17945at 380.707 kb on - strand, within ABZR87_RS17945at 380.707 kb on - strand, within ABZR87_RS17945at 380.707 kb on - strand, within ABZR87_RS17945at 380.728 kb on + strand, within ABZR87_RS17945at 380.728 kb on + strand, within ABZR87_RS17945at 380.728 kb on + strand, within ABZR87_RS17945at 380.728 kb on + strand, within ABZR87_RS17945at 380.728 kb on + strand, within ABZR87_RS17945at 380.729 kb on - strand, within ABZR87_RS17945at 380.729 kb on - strand, within ABZR87_RS17945at 380.818 kb on + strand, within ABZR87_RS17945at 380.818 kb on + strand, within ABZR87_RS17945at 380.818 kb on + strand, within ABZR87_RS17945at 380.818 kb on + strand, within ABZR87_RS17945at 380.819 kb on - strand, within ABZR87_RS17945at 380.819 kb on - strand, within ABZR87_RS17945at 380.867 kb on - strand, within ABZR87_RS17945at 381.105 kb on + strand, within ABZR87_RS17945at 381.235 kb on + strand, within ABZR87_RS17945at 381.355 kb on + strandat 381.355 kb on + strandat 381.356 kb on - strandat 381.356 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ra1_0.1
remove
379,025 + ABZR87_RS17930 0.15 +2.6
379,025 + ABZR87_RS17930 0.15 -0.9
379,025 + ABZR87_RS17930 0.15 -0.5
379,025 + ABZR87_RS17930 0.15 +0.6
379,025 + ABZR87_RS17930 0.15 -0.3
379,026 - ABZR87_RS17930 0.15 -0.1
379,026 - ABZR87_RS17930 0.15 +1.3
379,026 - ABZR87_RS17930 0.15 -2.6
379,026 - ABZR87_RS17930 0.15 -0.4
379,346 + +0.3
379,346 + -1.5
379,346 + -1.8
379,346 + +0.4
379,346 + -1.7
379,347 - -0.1
379,347 - +0.9
379,347 - -0.6
379,500 + ABZR87_RS17935 0.23 -1.5
379,500 + ABZR87_RS17935 0.23 -1.8
379,500 + ABZR87_RS17935 0.23 +0.0
379,501 - ABZR87_RS17935 0.23 +0.1
379,501 - ABZR87_RS17935 0.23 -1.6
379,608 + ABZR87_RS17935 0.42 -0.7
379,608 + ABZR87_RS17935 0.42 -0.4
379,609 - ABZR87_RS17935 0.42 -0.1
379,665 + ABZR87_RS17935 0.52 +1.6
379,665 + ABZR87_RS17935 0.52 -0.4
379,675 - ABZR87_RS17935 0.54 +0.1
379,932 + -0.3
379,933 - -1.2
379,965 + -0.4
379,965 + +1.1
379,966 - -1.1
379,966 - -1.1
379,966 - -2.0
379,966 - +0.4
379,974 - -1.0
380,025 + +0.2
380,026 - -1.0
380,026 - -0.2
380,031 + +1.0
380,037 + -0.1
380,043 - ABZR87_RS17940 0.11 -0.1
380,047 - ABZR87_RS17940 0.12 -0.3
380,062 + ABZR87_RS17940 0.16 +1.3
380,082 + ABZR87_RS17940 0.21 -0.2
380,082 + ABZR87_RS17940 0.21 -0.1
380,082 + ABZR87_RS17940 0.21 +0.1
380,082 + ABZR87_RS17940 0.21 -0.6
380,082 + ABZR87_RS17940 0.21 +2.6
380,082 + ABZR87_RS17940 0.21 -0.9
380,082 + ABZR87_RS17940 0.21 -0.5
380,082 + ABZR87_RS17940 0.21 -1.4
380,082 + ABZR87_RS17940 0.21 -2.0
380,082 + ABZR87_RS17940 0.21 +1.8
380,082 + ABZR87_RS17940 0.21 +0.1
380,082 + ABZR87_RS17940 0.21 +0.1
380,082 + ABZR87_RS17940 0.21 -1.2
380,082 + ABZR87_RS17940 0.21 -1.3
380,082 + ABZR87_RS17940 0.21 +0.3
380,083 - ABZR87_RS17940 0.22 -1.4
380,083 - ABZR87_RS17940 0.22 -1.1
380,083 - ABZR87_RS17940 0.22 -1.0
380,083 - ABZR87_RS17940 0.22 -1.2
380,083 - ABZR87_RS17940 0.22 -0.7
380,083 - ABZR87_RS17940 0.22 -1.4
380,083 - ABZR87_RS17940 0.22 -0.7
380,083 - ABZR87_RS17940 0.22 -0.8
380,083 - ABZR87_RS17940 0.22 -2.6
380,088 + ABZR87_RS17940 0.23 -1.4
380,088 + ABZR87_RS17940 0.23 -0.5
380,088 + ABZR87_RS17940 0.23 -0.8
380,088 + ABZR87_RS17940 0.23 -1.6
380,088 + ABZR87_RS17940 0.23 +0.5
380,088 + ABZR87_RS17940 0.23 -1.2
380,088 + ABZR87_RS17940 0.23 +2.6
380,088 + ABZR87_RS17940 0.23 +0.5
380,089 - ABZR87_RS17940 0.23 -0.1
380,089 - ABZR87_RS17940 0.23 +0.2
380,089 - ABZR87_RS17940 0.23 -1.6
380,089 - ABZR87_RS17940 0.23 -1.2
380,089 - ABZR87_RS17940 0.23 -0.2
380,089 - ABZR87_RS17940 0.23 -0.4
380,089 - ABZR87_RS17940 0.23 -1.1
380,212 + ABZR87_RS17940 0.56 -0.9
380,212 + ABZR87_RS17940 0.56 +0.4
380,213 - ABZR87_RS17940 0.56 -0.7
380,213 - ABZR87_RS17940 0.56 -0.9
380,213 - ABZR87_RS17940 0.56 -1.6
380,371 - -1.3
380,433 + +0.3
380,445 + -0.4
380,445 + +2.1
380,445 + +0.2
380,446 - -0.2
380,446 - -2.5
380,446 - -0.9
380,486 + -1.9
380,486 + +0.1
380,487 - -1.8
380,500 + -3.5
380,501 - -2.1
380,533 + -0.8
380,533 + -0.0
380,533 + -0.9
380,533 + +0.1
380,533 + -0.3
380,533 + -2.3
380,534 - +0.6
380,534 - -0.7
380,704 + ABZR87_RS17945 0.26 -1.7
380,704 + ABZR87_RS17945 0.26 -1.5
380,704 + ABZR87_RS17945 0.26 -0.2
380,704 + ABZR87_RS17945 0.26 -1.9
380,704 + ABZR87_RS17945 0.26 -0.5
380,704 + ABZR87_RS17945 0.26 -0.6
380,705 - ABZR87_RS17945 0.26 -1.5
380,705 - ABZR87_RS17945 0.26 -2.2
380,705 - ABZR87_RS17945 0.26 -0.5
380,705 - ABZR87_RS17945 0.26 +0.1
380,705 - ABZR87_RS17945 0.26 -0.1
380,705 - ABZR87_RS17945 0.26 -1.9
380,705 - ABZR87_RS17945 0.26 -1.2
380,706 + ABZR87_RS17945 0.26 -2.0
380,706 + ABZR87_RS17945 0.26 -0.1
380,707 - ABZR87_RS17945 0.26 -1.9
380,707 - ABZR87_RS17945 0.26 +0.1
380,707 - ABZR87_RS17945 0.26 -2.6
380,707 - ABZR87_RS17945 0.26 -1.3
380,728 + ABZR87_RS17945 0.29 -1.2
380,728 + ABZR87_RS17945 0.29 -2.2
380,728 + ABZR87_RS17945 0.29 +0.9
380,728 + ABZR87_RS17945 0.29 +0.3
380,728 + ABZR87_RS17945 0.29 -2.5
380,729 - ABZR87_RS17945 0.29 -0.0
380,729 - ABZR87_RS17945 0.29 -1.9
380,818 + ABZR87_RS17945 0.39 -2.1
380,818 + ABZR87_RS17945 0.39 -0.7
380,818 + ABZR87_RS17945 0.39 -2.9
380,818 + ABZR87_RS17945 0.39 +0.9
380,819 - ABZR87_RS17945 0.39 -2.3
380,819 - ABZR87_RS17945 0.39 -1.2
380,867 - ABZR87_RS17945 0.45 -1.8
381,105 + ABZR87_RS17945 0.72 +0.2
381,235 + ABZR87_RS17945 0.87 -0.4
381,355 + +0.5
381,355 + +0.6
381,356 - -1.8
381,356 - -2.0

Or see this region's nucleotide sequence