Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17880

Experiment: Ra1_0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17875 and ABZR87_RS17880 are separated by 304 nucleotidesABZR87_RS17880 and ABZR87_RS17885 are separated by 9 nucleotides ABZR87_RS17875: ABZR87_RS17875 - hypothetical protein, at 367,375 to 368,058 _RS17875 ABZR87_RS17880: ABZR87_RS17880 - GNAT family protein, at 368,363 to 369,070 _RS17880 ABZR87_RS17885: ABZR87_RS17885 - membrane protein, at 369,080 to 370,696 _RS17885 Position (kb) 368 369 370Strain fitness (log2 ratio) -2 -1 0 1 2at 367.376 kb on + strandat 367.465 kb on + strand, within ABZR87_RS17875at 367.465 kb on + strand, within ABZR87_RS17875at 367.466 kb on - strand, within ABZR87_RS17875at 367.466 kb on - strand, within ABZR87_RS17875at 367.466 kb on - strand, within ABZR87_RS17875at 367.478 kb on + strand, within ABZR87_RS17875at 367.478 kb on + strand, within ABZR87_RS17875at 367.478 kb on + strand, within ABZR87_RS17875at 367.478 kb on + strand, within ABZR87_RS17875at 367.478 kb on + strand, within ABZR87_RS17875at 367.479 kb on - strand, within ABZR87_RS17875at 367.506 kb on - strand, within ABZR87_RS17875at 367.559 kb on + strand, within ABZR87_RS17875at 367.559 kb on + strand, within ABZR87_RS17875at 367.560 kb on - strand, within ABZR87_RS17875at 367.560 kb on - strand, within ABZR87_RS17875at 367.706 kb on + strand, within ABZR87_RS17875at 367.707 kb on - strand, within ABZR87_RS17875at 367.742 kb on - strand, within ABZR87_RS17875at 367.742 kb on - strand, within ABZR87_RS17875at 367.761 kb on + strand, within ABZR87_RS17875at 367.762 kb on - strand, within ABZR87_RS17875at 367.928 kb on + strand, within ABZR87_RS17875at 367.928 kb on + strand, within ABZR87_RS17875at 367.928 kb on + strand, within ABZR87_RS17875at 368.034 kb on - strandat 368.048 kb on + strandat 368.048 kb on + strandat 368.048 kb on + strandat 368.049 kb on - strandat 368.109 kb on + strandat 368.113 kb on + strandat 368.113 kb on + strandat 368.113 kb on + strandat 368.113 kb on + strandat 368.113 kb on + strandat 368.113 kb on + strandat 368.114 kb on - strandat 368.114 kb on - strandat 368.114 kb on - strandat 368.114 kb on - strandat 368.114 kb on - strandat 368.114 kb on - strandat 368.114 kb on - strandat 368.129 kb on + strandat 368.130 kb on - strandat 368.141 kb on + strandat 368.141 kb on + strandat 368.141 kb on + strandat 368.142 kb on - strandat 368.174 kb on + strandat 368.174 kb on + strandat 368.174 kb on + strandat 368.175 kb on - strandat 368.175 kb on - strandat 368.175 kb on - strandat 368.175 kb on - strandat 368.175 kb on - strandat 368.227 kb on + strandat 368.260 kb on - strandat 368.382 kb on - strandat 368.459 kb on + strand, within ABZR87_RS17880at 368.460 kb on - strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.550 kb on - strand, within ABZR87_RS17880at 368.550 kb on - strand, within ABZR87_RS17880at 368.550 kb on - strand, within ABZR87_RS17880at 368.550 kb on - strand, within ABZR87_RS17880at 368.550 kb on - strand, within ABZR87_RS17880at 368.550 kb on - strand, within ABZR87_RS17880at 368.550 kb on - strand, within ABZR87_RS17880at 368.550 kb on - strand, within ABZR87_RS17880at 368.594 kb on + strand, within ABZR87_RS17880at 368.594 kb on + strand, within ABZR87_RS17880at 368.594 kb on + strand, within ABZR87_RS17880at 368.594 kb on + strand, within ABZR87_RS17880at 368.595 kb on - strand, within ABZR87_RS17880at 368.595 kb on - strand, within ABZR87_RS17880at 368.595 kb on - strand, within ABZR87_RS17880at 368.595 kb on - strand, within ABZR87_RS17880at 368.595 kb on - strand, within ABZR87_RS17880at 368.633 kb on + strand, within ABZR87_RS17880at 368.633 kb on + strand, within ABZR87_RS17880at 368.634 kb on - strand, within ABZR87_RS17880at 368.634 kb on - strand, within ABZR87_RS17880at 368.634 kb on - strand, within ABZR87_RS17880at 368.634 kb on - strand, within ABZR87_RS17880at 368.822 kb on + strand, within ABZR87_RS17880at 368.918 kb on + strand, within ABZR87_RS17880at 368.918 kb on + strand, within ABZR87_RS17880at 368.919 kb on - strand, within ABZR87_RS17880at 369.081 kb on + strandat 369.082 kb on - strandat 369.100 kb on + strandat 369.101 kb on - strandat 369.101 kb on - strandat 369.101 kb on - strandat 369.108 kb on + strandat 369.109 kb on - strandat 369.109 kb on - strandat 369.109 kb on - strandat 369.426 kb on + strand, within ABZR87_RS17885at 369.426 kb on + strand, within ABZR87_RS17885at 369.426 kb on + strand, within ABZR87_RS17885at 369.427 kb on - strand, within ABZR87_RS17885at 369.538 kb on - strand, within ABZR87_RS17885at 369.645 kb on + strand, within ABZR87_RS17885at 369.645 kb on + strand, within ABZR87_RS17885at 369.646 kb on - strand, within ABZR87_RS17885at 369.666 kb on + strand, within ABZR87_RS17885at 369.666 kb on + strand, within ABZR87_RS17885at 369.666 kb on + strand, within ABZR87_RS17885at 369.666 kb on + strand, within ABZR87_RS17885at 369.666 kb on + strand, within ABZR87_RS17885at 369.666 kb on + strand, within ABZR87_RS17885at 369.666 kb on + strand, within ABZR87_RS17885at 369.666 kb on + strand, within ABZR87_RS17885at 369.667 kb on - strand, within ABZR87_RS17885at 369.667 kb on - strand, within ABZR87_RS17885at 369.667 kb on - strand, within ABZR87_RS17885at 369.667 kb on - strand, within ABZR87_RS17885at 369.667 kb on - strand, within ABZR87_RS17885at 369.668 kb on + strand, within ABZR87_RS17885at 369.668 kb on + strand, within ABZR87_RS17885at 369.668 kb on + strand, within ABZR87_RS17885at 369.669 kb on - strand, within ABZR87_RS17885at 369.669 kb on - strand, within ABZR87_RS17885at 369.669 kb on - strand, within ABZR87_RS17885at 369.735 kb on + strand, within ABZR87_RS17885at 369.735 kb on + strand, within ABZR87_RS17885at 369.735 kb on + strand, within ABZR87_RS17885at 369.736 kb on - strand, within ABZR87_RS17885at 369.736 kb on - strand, within ABZR87_RS17885at 369.736 kb on - strand, within ABZR87_RS17885at 369.736 kb on - strand, within ABZR87_RS17885at 369.867 kb on + strand, within ABZR87_RS17885at 369.868 kb on - strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra1_0.1
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367,376 + -0.6
367,465 + ABZR87_RS17875 0.13 +0.1
367,465 + ABZR87_RS17875 0.13 +0.2
367,466 - ABZR87_RS17875 0.13 +1.8
367,466 - ABZR87_RS17875 0.13 +0.3
367,466 - ABZR87_RS17875 0.13 -0.4
367,478 + ABZR87_RS17875 0.15 +0.3
367,478 + ABZR87_RS17875 0.15 -0.2
367,478 + ABZR87_RS17875 0.15 +2.6
367,478 + ABZR87_RS17875 0.15 -0.4
367,478 + ABZR87_RS17875 0.15 +0.2
367,479 - ABZR87_RS17875 0.15 -0.6
367,506 - ABZR87_RS17875 0.19 +0.3
367,559 + ABZR87_RS17875 0.27 -0.6
367,559 + ABZR87_RS17875 0.27 +0.1
367,560 - ABZR87_RS17875 0.27 +2.3
367,560 - ABZR87_RS17875 0.27 +0.3
367,706 + ABZR87_RS17875 0.48 +2.0
367,707 - ABZR87_RS17875 0.49 +0.2
367,742 - ABZR87_RS17875 0.54 +0.6
367,742 - ABZR87_RS17875 0.54 -0.1
367,761 + ABZR87_RS17875 0.56 +0.6
367,762 - ABZR87_RS17875 0.57 -0.1
367,928 + ABZR87_RS17875 0.81 +0.2
367,928 + ABZR87_RS17875 0.81 -0.5
367,928 + ABZR87_RS17875 0.81 -2.1
368,034 - -1.0
368,048 + -0.9
368,048 + -0.4
368,048 + +0.3
368,049 - -0.9
368,109 + -0.8
368,113 + +0.3
368,113 + -0.2
368,113 + -0.8
368,113 + +0.1
368,113 + +0.2
368,113 + -0.9
368,114 - +0.7
368,114 - +1.2
368,114 - +0.0
368,114 - +0.1
368,114 - +1.1
368,114 - +0.3
368,114 - +2.1
368,129 + -1.2
368,130 - -1.0
368,141 + -0.0
368,141 + +0.8
368,141 + +0.7
368,142 - -0.9
368,174 + +0.4
368,174 + +0.6
368,174 + +0.2
368,175 - +0.1
368,175 - +1.6
368,175 - +1.3
368,175 - -0.9
368,175 - -0.6
368,227 + +0.6
368,260 - -0.1
368,382 - +0.2
368,459 + ABZR87_RS17880 0.14 -2.5
368,460 - ABZR87_RS17880 0.14 -0.9
368,549 + ABZR87_RS17880 0.26 -0.5
368,549 + ABZR87_RS17880 0.26 -1.1
368,549 + ABZR87_RS17880 0.26 +1.0
368,549 + ABZR87_RS17880 0.26 +1.6
368,549 + ABZR87_RS17880 0.26 -0.7
368,549 + ABZR87_RS17880 0.26 +0.2
368,549 + ABZR87_RS17880 0.26 -0.1
368,549 + ABZR87_RS17880 0.26 -0.4
368,549 + ABZR87_RS17880 0.26 -0.4
368,549 + ABZR87_RS17880 0.26 -0.2
368,550 - ABZR87_RS17880 0.26 -0.2
368,550 - ABZR87_RS17880 0.26 -0.9
368,550 - ABZR87_RS17880 0.26 +0.2
368,550 - ABZR87_RS17880 0.26 +0.9
368,550 - ABZR87_RS17880 0.26 -0.2
368,550 - ABZR87_RS17880 0.26 +0.4
368,550 - ABZR87_RS17880 0.26 -0.6
368,550 - ABZR87_RS17880 0.26 -0.4
368,594 + ABZR87_RS17880 0.33 -0.0
368,594 + ABZR87_RS17880 0.33 -1.0
368,594 + ABZR87_RS17880 0.33 -1.3
368,594 + ABZR87_RS17880 0.33 +1.0
368,595 - ABZR87_RS17880 0.33 -0.2
368,595 - ABZR87_RS17880 0.33 +0.1
368,595 - ABZR87_RS17880 0.33 -0.8
368,595 - ABZR87_RS17880 0.33 +0.1
368,595 - ABZR87_RS17880 0.33 +0.1
368,633 + ABZR87_RS17880 0.38 -0.5
368,633 + ABZR87_RS17880 0.38 +0.1
368,634 - ABZR87_RS17880 0.38 -0.5
368,634 - ABZR87_RS17880 0.38 -0.7
368,634 - ABZR87_RS17880 0.38 -0.8
368,634 - ABZR87_RS17880 0.38 +0.6
368,822 + ABZR87_RS17880 0.65 -0.8
368,918 + ABZR87_RS17880 0.78 -0.7
368,918 + ABZR87_RS17880 0.78 -0.8
368,919 - ABZR87_RS17880 0.79 +0.1
369,081 + -0.0
369,082 - -0.4
369,100 + -0.7
369,101 - +1.3
369,101 - +0.1
369,101 - +0.4
369,108 + +0.2
369,109 - +0.6
369,109 - +1.6
369,109 - -0.5
369,426 + ABZR87_RS17885 0.21 +1.0
369,426 + ABZR87_RS17885 0.21 +0.2
369,426 + ABZR87_RS17885 0.21 -0.4
369,427 - ABZR87_RS17885 0.21 +0.5
369,538 - ABZR87_RS17885 0.28 -0.2
369,645 + ABZR87_RS17885 0.35 -0.4
369,645 + ABZR87_RS17885 0.35 +0.1
369,646 - ABZR87_RS17885 0.35 +0.1
369,666 + ABZR87_RS17885 0.36 +0.5
369,666 + ABZR87_RS17885 0.36 -1.8
369,666 + ABZR87_RS17885 0.36 +1.0
369,666 + ABZR87_RS17885 0.36 -0.9
369,666 + ABZR87_RS17885 0.36 -1.1
369,666 + ABZR87_RS17885 0.36 +0.9
369,666 + ABZR87_RS17885 0.36 -0.0
369,666 + ABZR87_RS17885 0.36 +0.4
369,667 - ABZR87_RS17885 0.36 +0.6
369,667 - ABZR87_RS17885 0.36 -0.3
369,667 - ABZR87_RS17885 0.36 -0.8
369,667 - ABZR87_RS17885 0.36 +0.7
369,667 - ABZR87_RS17885 0.36 -0.6
369,668 + ABZR87_RS17885 0.36 -0.5
369,668 + ABZR87_RS17885 0.36 -0.4
369,668 + ABZR87_RS17885 0.36 -0.3
369,669 - ABZR87_RS17885 0.36 -1.4
369,669 - ABZR87_RS17885 0.36 +0.1
369,669 - ABZR87_RS17885 0.36 +0.1
369,735 + ABZR87_RS17885 0.41 +1.1
369,735 + ABZR87_RS17885 0.41 -0.3
369,735 + ABZR87_RS17885 0.41 +0.1
369,736 - ABZR87_RS17885 0.41 +0.1
369,736 - ABZR87_RS17885 0.41 -1.7
369,736 - ABZR87_RS17885 0.41 -1.2
369,736 - ABZR87_RS17885 0.41 -0.3
369,867 + ABZR87_RS17885 0.49 -0.3
369,868 - ABZR87_RS17885 0.49 -0.9
370,029 + ABZR87_RS17885 0.59 -0.3
370,029 + ABZR87_RS17885 0.59 -1.6
370,029 + ABZR87_RS17885 0.59 +0.1
370,029 + ABZR87_RS17885 0.59 -1.1
370,029 + ABZR87_RS17885 0.59 +0.6
370,029 + ABZR87_RS17885 0.59 -1.9
370,029 + ABZR87_RS17885 0.59 -1.7
370,029 + ABZR87_RS17885 0.59 -0.5
370,029 + ABZR87_RS17885 0.59 -0.3
370,029 + ABZR87_RS17885 0.59 +0.4
370,029 + ABZR87_RS17885 0.59 -2.2
370,030 - ABZR87_RS17885 0.59 +0.9
370,030 - ABZR87_RS17885 0.59 -0.4
370,030 - ABZR87_RS17885 0.59 -0.6
370,030 - ABZR87_RS17885 0.59 -0.5
370,030 - ABZR87_RS17885 0.59 +1.4
370,030 - ABZR87_RS17885 0.59 -2.3
370,030 - ABZR87_RS17885 0.59 -0.0
370,030 - ABZR87_RS17885 0.59 -1.3
370,030 - ABZR87_RS17885 0.59 -1.1

Or see this region's nucleotide sequence