Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17840 and ABZR87_RS17845 are separated by 148 nucleotides ABZR87_RS17845 and ABZR87_RS17850 overlap by 8 nucleotides ABZR87_RS17850 and ABZR87_RS17855 are separated by 9 nucleotides ABZR87_RS17855 and ABZR87_RS17860 are separated by 28 nucleotides
ABZR87_RS17840: ABZR87_RS17840 - 3-oxoacyl-[acyl-carrier-protein] synthase III C-terminal domain-containing protein, at 360,931 to 361,929
_RS17840
ABZR87_RS17845: ABZR87_RS17845 - Crp/Fnr family transcriptional regulator, at 362,078 to 362,782
_RS17845
ABZR87_RS17850: ABZR87_RS17850 - 2-hydroxychromene-2-carboxylate isomerase, at 362,775 to 363,410
_RS17850
ABZR87_RS17855: ABZR87_RS17855 - 3-oxoacid CoA-transferase subunit B, at 363,420 to 364,094
_RS17855
ABZR87_RS17860: ABZR87_RS17860 - CoA-transferase, at 364,123 to 364,884
_RS17860
Position (kb) 362
363
364 Strain fitness (log2 ratio) -2
-1
0
1
2 at 361.821 kb on - strand, within ABZR87_RS17840 at 361.917 kb on + strand at 361.917 kb on + strand at 361.917 kb on + strand at 361.917 kb on + strand at 361.917 kb on + strand at 361.917 kb on + strand at 361.917 kb on + strand at 361.917 kb on + strand at 361.917 kb on + strand at 361.917 kb on + strand at 361.917 kb on + strand at 361.917 kb on + strand at 361.917 kb on + strand at 361.918 kb on - strand at 361.918 kb on - strand at 361.918 kb on - strand at 361.918 kb on - strand at 361.918 kb on - strand at 361.918 kb on - strand at 361.918 kb on - strand at 361.918 kb on - strand at 361.918 kb on - strand at 361.918 kb on - strand at 361.994 kb on + strand at 361.994 kb on + strand at 361.994 kb on + strand at 361.995 kb on - strand at 361.995 kb on - strand at 362.025 kb on - strand at 362.025 kb on - strand at 362.064 kb on + strand at 362.065 kb on - strand at 362.088 kb on + strand at 362.088 kb on + strand at 362.089 kb on - strand at 362.089 kb on - strand at 362.089 kb on - strand at 362.089 kb on - strand at 362.130 kb on + strand at 362.256 kb on + strand, within ABZR87_RS17845 at 362.326 kb on - strand, within ABZR87_RS17845 at 362.326 kb on - strand, within ABZR87_RS17845 at 362.472 kb on + strand, within ABZR87_RS17845 at 362.725 kb on + strand at 363.077 kb on + strand, within ABZR87_RS17850 at 363.077 kb on + strand, within ABZR87_RS17850 at 363.078 kb on - strand, within ABZR87_RS17850 at 363.078 kb on - strand, within ABZR87_RS17850 at 363.078 kb on - strand, within ABZR87_RS17850 at 363.220 kb on + strand, within ABZR87_RS17850 at 363.676 kb on + strand, within ABZR87_RS17855 at 363.797 kb on - strand, within ABZR87_RS17855 at 363.797 kb on - strand, within ABZR87_RS17855 at 363.947 kb on + strand, within ABZR87_RS17855 at 363.979 kb on + strand, within ABZR87_RS17855 at 363.979 kb on + strand, within ABZR87_RS17855 at 363.979 kb on + strand, within ABZR87_RS17855 at 363.979 kb on + strand, within ABZR87_RS17855 at 363.979 kb on + strand, within ABZR87_RS17855 at 363.980 kb on - strand, within ABZR87_RS17855 at 363.980 kb on - strand, within ABZR87_RS17855 at 363.980 kb on - strand, within ABZR87_RS17855 at 363.980 kb on - strand, within ABZR87_RS17855 at 364.172 kb on + strand at 364.172 kb on + strand at 364.173 kb on - strand at 364.173 kb on - strand at 364.298 kb on + strand, within ABZR87_RS17860 at 364.298 kb on + strand, within ABZR87_RS17860 at 364.298 kb on + strand, within ABZR87_RS17860 at 364.298 kb on + strand, within ABZR87_RS17860 at 364.299 kb on - strand, within ABZR87_RS17860 at 364.299 kb on - strand, within ABZR87_RS17860 at 364.368 kb on + strand, within ABZR87_RS17860 at 364.368 kb on + strand, within ABZR87_RS17860 at 364.368 kb on + strand, within ABZR87_RS17860
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 361,821 - ABZR87_RS17840 0.89 -0.4 361,917 + +0.1 361,917 + +1.0 361,917 + +1.2 361,917 + -0.6 361,917 + -0.9 361,917 + -0.8 361,917 + -0.8 361,917 + -1.1 361,917 + +0.8 361,917 + -0.4 361,917 + +0.1 361,917 + +1.6 361,917 + -0.4 361,918 - +0.1 361,918 - +0.1 361,918 - -0.3 361,918 - +0.6 361,918 - -0.4 361,918 - -0.7 361,918 - -0.6 361,918 - +0.4 361,918 - -0.9 361,918 - +1.0 361,994 + +0.5 361,994 + -0.4 361,994 + +0.1 361,995 - -0.0 361,995 - -0.3 362,025 - -0.5 362,025 - -0.7 362,064 + +0.6 362,065 - +0.1 362,088 + +0.5 362,088 + +0.1 362,089 - +0.3 362,089 - +0.5 362,089 - -0.3 362,089 - +1.5 362,130 + +0.2 362,256 + ABZR87_RS17845 0.25 +1.6 362,326 - ABZR87_RS17845 0.35 -0.2 362,326 - ABZR87_RS17845 0.35 -0.1 362,472 + ABZR87_RS17845 0.56 +0.3 362,725 + -1.4 363,077 + ABZR87_RS17850 0.47 -0.6 363,077 + ABZR87_RS17850 0.47 -0.9 363,078 - ABZR87_RS17850 0.48 -0.2 363,078 - ABZR87_RS17850 0.48 -0.2 363,078 - ABZR87_RS17850 0.48 -1.2 363,220 + ABZR87_RS17850 0.70 -1.1 363,676 + ABZR87_RS17855 0.38 -0.7 363,797 - ABZR87_RS17855 0.56 +0.1 363,797 - ABZR87_RS17855 0.56 +0.6 363,947 + ABZR87_RS17855 0.78 +1.9 363,979 + ABZR87_RS17855 0.83 -0.9 363,979 + ABZR87_RS17855 0.83 -0.7 363,979 + ABZR87_RS17855 0.83 -0.0 363,979 + ABZR87_RS17855 0.83 +0.1 363,979 + ABZR87_RS17855 0.83 -0.7 363,980 - ABZR87_RS17855 0.83 -0.4 363,980 - ABZR87_RS17855 0.83 +0.0 363,980 - ABZR87_RS17855 0.83 -1.5 363,980 - ABZR87_RS17855 0.83 -0.1 364,172 + -1.1 364,172 + -1.9 364,173 - -0.2 364,173 - -0.9 364,298 + ABZR87_RS17860 0.23 +0.5 364,298 + ABZR87_RS17860 0.23 -0.6 364,298 + ABZR87_RS17860 0.23 -1.0 364,298 + ABZR87_RS17860 0.23 -1.1 364,299 - ABZR87_RS17860 0.23 -1.1 364,299 - ABZR87_RS17860 0.23 +0.5 364,368 + ABZR87_RS17860 0.32 +0.5 364,368 + ABZR87_RS17860 0.32 -1.9 364,368 + ABZR87_RS17860 0.32 +0.5
Or see this region's nucleotide sequence