Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17785

Experiment: Ra1_0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17780 and ABZR87_RS17785 are separated by 146 nucleotidesABZR87_RS17785 and ABZR87_RS17790 are separated by 27 nucleotides ABZR87_RS17780: ABZR87_RS17780 - LysR family transcriptional regulator, at 350,071 to 350,955 _RS17780 ABZR87_RS17785: ABZR87_RS17785 - AEC family transporter, at 351,102 to 352,055 _RS17785 ABZR87_RS17790: ABZR87_RS17790 - alpha/beta hydrolase, at 352,083 to 353,129 _RS17790 Position (kb) 351 352 353Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 350.293 kb on + strand, within ABZR87_RS17780at 350.294 kb on - strand, within ABZR87_RS17780at 350.294 kb on - strand, within ABZR87_RS17780at 350.554 kb on + strand, within ABZR87_RS17780at 350.555 kb on - strand, within ABZR87_RS17780at 350.555 kb on - strand, within ABZR87_RS17780at 350.590 kb on + strand, within ABZR87_RS17780at 350.591 kb on - strand, within ABZR87_RS17780at 350.591 kb on - strand, within ABZR87_RS17780at 350.591 kb on - strand, within ABZR87_RS17780at 350.997 kb on + strandat 350.997 kb on + strandat 350.997 kb on + strandat 350.997 kb on + strandat 350.998 kb on - strandat 350.998 kb on - strandat 351.222 kb on + strand, within ABZR87_RS17785at 351.222 kb on + strand, within ABZR87_RS17785at 351.223 kb on - strand, within ABZR87_RS17785at 351.223 kb on - strand, within ABZR87_RS17785at 351.225 kb on + strand, within ABZR87_RS17785at 351.225 kb on + strand, within ABZR87_RS17785at 351.226 kb on - strand, within ABZR87_RS17785at 351.226 kb on - strand, within ABZR87_RS17785at 351.226 kb on - strand, within ABZR87_RS17785at 351.226 kb on - strand, within ABZR87_RS17785at 351.226 kb on - strand, within ABZR87_RS17785at 351.226 kb on - strand, within ABZR87_RS17785at 351.226 kb on - strand, within ABZR87_RS17785at 351.423 kb on + strand, within ABZR87_RS17785at 351.423 kb on + strand, within ABZR87_RS17785at 351.424 kb on - strand, within ABZR87_RS17785at 351.484 kb on + strand, within ABZR87_RS17785at 351.544 kb on - strand, within ABZR87_RS17785at 351.904 kb on - strand, within ABZR87_RS17785at 352.181 kb on - strandat 352.310 kb on - strand, within ABZR87_RS17790at 352.348 kb on + strand, within ABZR87_RS17790at 352.348 kb on + strand, within ABZR87_RS17790at 352.348 kb on + strand, within ABZR87_RS17790at 352.408 kb on + strand, within ABZR87_RS17790at 352.408 kb on + strand, within ABZR87_RS17790at 352.408 kb on + strand, within ABZR87_RS17790at 352.408 kb on + strand, within ABZR87_RS17790at 352.409 kb on - strand, within ABZR87_RS17790at 352.409 kb on - strand, within ABZR87_RS17790at 352.409 kb on - strand, within ABZR87_RS17790at 352.516 kb on + strand, within ABZR87_RS17790at 352.516 kb on + strand, within ABZR87_RS17790at 352.517 kb on - strand, within ABZR87_RS17790at 352.525 kb on + strand, within ABZR87_RS17790at 352.592 kb on - strand, within ABZR87_RS17790at 352.804 kb on + strand, within ABZR87_RS17790at 352.823 kb on - strand, within ABZR87_RS17790at 352.823 kb on - strand, within ABZR87_RS17790at 352.858 kb on + strand, within ABZR87_RS17790at 352.858 kb on + strand, within ABZR87_RS17790at 352.858 kb on + strand, within ABZR87_RS17790at 352.858 kb on + strand, within ABZR87_RS17790at 352.858 kb on + strand, within ABZR87_RS17790at 352.858 kb on + strand, within ABZR87_RS17790at 352.859 kb on - strand, within ABZR87_RS17790at 352.859 kb on - strand, within ABZR87_RS17790at 352.864 kb on + strand, within ABZR87_RS17790at 352.864 kb on + strand, within ABZR87_RS17790at 352.864 kb on + strand, within ABZR87_RS17790at 352.864 kb on + strand, within ABZR87_RS17790at 352.864 kb on + strand, within ABZR87_RS17790at 352.864 kb on + strand, within ABZR87_RS17790at 352.865 kb on - strand, within ABZR87_RS17790at 352.865 kb on - strand, within ABZR87_RS17790at 352.865 kb on - strand, within ABZR87_RS17790at 352.865 kb on - strand, within ABZR87_RS17790at 352.865 kb on - strand, within ABZR87_RS17790at 352.865 kb on - strand, within ABZR87_RS17790at 352.874 kb on - strand, within ABZR87_RS17790at 352.874 kb on - strand, within ABZR87_RS17790at 352.930 kb on + strand, within ABZR87_RS17790at 352.931 kb on - strand, within ABZR87_RS17790

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra1_0.1
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350,293 + ABZR87_RS17780 0.25 +0.3
350,294 - ABZR87_RS17780 0.25 +0.4
350,294 - ABZR87_RS17780 0.25 -0.6
350,554 + ABZR87_RS17780 0.55 -1.9
350,555 - ABZR87_RS17780 0.55 -0.0
350,555 - ABZR87_RS17780 0.55 -0.4
350,590 + ABZR87_RS17780 0.59 -3.3
350,591 - ABZR87_RS17780 0.59 -0.4
350,591 - ABZR87_RS17780 0.59 -0.3
350,591 - ABZR87_RS17780 0.59 -0.5
350,997 + +0.6
350,997 + -2.0
350,997 + -0.3
350,997 + +0.7
350,998 - -0.7
350,998 - +0.0
351,222 + ABZR87_RS17785 0.13 +0.1
351,222 + ABZR87_RS17785 0.13 +0.7
351,223 - ABZR87_RS17785 0.13 -1.1
351,223 - ABZR87_RS17785 0.13 +0.3
351,225 + ABZR87_RS17785 0.13 +0.3
351,225 + ABZR87_RS17785 0.13 -0.0
351,226 - ABZR87_RS17785 0.13 -0.6
351,226 - ABZR87_RS17785 0.13 +0.4
351,226 - ABZR87_RS17785 0.13 -1.4
351,226 - ABZR87_RS17785 0.13 -1.0
351,226 - ABZR87_RS17785 0.13 -1.3
351,226 - ABZR87_RS17785 0.13 -0.5
351,226 - ABZR87_RS17785 0.13 -1.4
351,423 + ABZR87_RS17785 0.34 -0.3
351,423 + ABZR87_RS17785 0.34 -0.4
351,424 - ABZR87_RS17785 0.34 -0.6
351,484 + ABZR87_RS17785 0.40 -1.4
351,544 - ABZR87_RS17785 0.46 -0.9
351,904 - ABZR87_RS17785 0.84 +0.9
352,181 - +0.3
352,310 - ABZR87_RS17790 0.22 -0.1
352,348 + ABZR87_RS17790 0.25 -0.5
352,348 + ABZR87_RS17790 0.25 +0.7
352,348 + ABZR87_RS17790 0.25 -0.4
352,408 + ABZR87_RS17790 0.31 -1.2
352,408 + ABZR87_RS17790 0.31 -0.2
352,408 + ABZR87_RS17790 0.31 -2.2
352,408 + ABZR87_RS17790 0.31 +1.0
352,409 - ABZR87_RS17790 0.31 -0.7
352,409 - ABZR87_RS17790 0.31 +0.0
352,409 - ABZR87_RS17790 0.31 -1.2
352,516 + ABZR87_RS17790 0.41 +0.2
352,516 + ABZR87_RS17790 0.41 -0.4
352,517 - ABZR87_RS17790 0.41 -0.4
352,525 + ABZR87_RS17790 0.42 +1.0
352,592 - ABZR87_RS17790 0.49 -0.4
352,804 + ABZR87_RS17790 0.69 +0.0
352,823 - ABZR87_RS17790 0.71 +0.0
352,823 - ABZR87_RS17790 0.71 -0.6
352,858 + ABZR87_RS17790 0.74 +0.0
352,858 + ABZR87_RS17790 0.74 +0.6
352,858 + ABZR87_RS17790 0.74 -0.6
352,858 + ABZR87_RS17790 0.74 +1.9
352,858 + ABZR87_RS17790 0.74 -0.3
352,858 + ABZR87_RS17790 0.74 -1.2
352,859 - ABZR87_RS17790 0.74 -0.2
352,859 - ABZR87_RS17790 0.74 -0.4
352,864 + ABZR87_RS17790 0.75 +0.5
352,864 + ABZR87_RS17790 0.75 +0.3
352,864 + ABZR87_RS17790 0.75 -1.3
352,864 + ABZR87_RS17790 0.75 +0.2
352,864 + ABZR87_RS17790 0.75 +0.0
352,864 + ABZR87_RS17790 0.75 -0.4
352,865 - ABZR87_RS17790 0.75 +1.3
352,865 - ABZR87_RS17790 0.75 -0.6
352,865 - ABZR87_RS17790 0.75 -0.1
352,865 - ABZR87_RS17790 0.75 -0.6
352,865 - ABZR87_RS17790 0.75 -0.8
352,865 - ABZR87_RS17790 0.75 +0.2
352,874 - ABZR87_RS17790 0.76 -0.5
352,874 - ABZR87_RS17790 0.76 +1.0
352,930 + ABZR87_RS17790 0.81 +0.5
352,931 - ABZR87_RS17790 0.81 +0.7

Or see this region's nucleotide sequence