Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17775 and ABZR87_RS17780 are separated by 162 nucleotides ABZR87_RS17780 and ABZR87_RS17785 are separated by 146 nucleotides
ABZR87_RS17775: ABZR87_RS17775 - acyl-CoA dehydrogenase family protein, at 348,691 to 349,908
_RS17775
ABZR87_RS17780: ABZR87_RS17780 - LysR family transcriptional regulator, at 350,071 to 350,955
_RS17780
ABZR87_RS17785: ABZR87_RS17785 - AEC family transporter, at 351,102 to 352,055
_RS17785
Position (kb) 350
351 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 349.153 kb on + strand, within ABZR87_RS17775 at 349.154 kb on - strand, within ABZR87_RS17775 at 349.156 kb on + strand, within ABZR87_RS17775 at 349.156 kb on + strand, within ABZR87_RS17775 at 349.157 kb on - strand, within ABZR87_RS17775 at 349.183 kb on + strand, within ABZR87_RS17775 at 349.465 kb on + strand, within ABZR87_RS17775 at 349.465 kb on + strand, within ABZR87_RS17775 at 349.465 kb on + strand, within ABZR87_RS17775 at 349.466 kb on - strand, within ABZR87_RS17775 at 349.466 kb on - strand, within ABZR87_RS17775 at 349.858 kb on + strand at 349.858 kb on + strand at 350.031 kb on + strand at 350.031 kb on + strand at 350.031 kb on + strand at 350.032 kb on - strand at 350.293 kb on + strand, within ABZR87_RS17780 at 350.294 kb on - strand, within ABZR87_RS17780 at 350.294 kb on - strand, within ABZR87_RS17780 at 350.554 kb on + strand, within ABZR87_RS17780 at 350.555 kb on - strand, within ABZR87_RS17780 at 350.555 kb on - strand, within ABZR87_RS17780 at 350.590 kb on + strand, within ABZR87_RS17780 at 350.591 kb on - strand, within ABZR87_RS17780 at 350.591 kb on - strand, within ABZR87_RS17780 at 350.591 kb on - strand, within ABZR87_RS17780 at 350.997 kb on + strand at 350.997 kb on + strand at 350.997 kb on + strand at 350.997 kb on + strand at 350.998 kb on - strand at 350.998 kb on - strand at 351.222 kb on + strand, within ABZR87_RS17785 at 351.222 kb on + strand, within ABZR87_RS17785 at 351.223 kb on - strand, within ABZR87_RS17785 at 351.223 kb on - strand, within ABZR87_RS17785 at 351.225 kb on + strand, within ABZR87_RS17785 at 351.225 kb on + strand, within ABZR87_RS17785 at 351.226 kb on - strand, within ABZR87_RS17785 at 351.226 kb on - strand, within ABZR87_RS17785 at 351.226 kb on - strand, within ABZR87_RS17785 at 351.226 kb on - strand, within ABZR87_RS17785 at 351.226 kb on - strand, within ABZR87_RS17785 at 351.226 kb on - strand, within ABZR87_RS17785 at 351.226 kb on - strand, within ABZR87_RS17785 at 351.423 kb on + strand, within ABZR87_RS17785 at 351.423 kb on + strand, within ABZR87_RS17785 at 351.424 kb on - strand, within ABZR87_RS17785 at 351.484 kb on + strand, within ABZR87_RS17785 at 351.544 kb on - strand, within ABZR87_RS17785 at 351.904 kb on - strand, within ABZR87_RS17785
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 349,153 + ABZR87_RS17775 0.38 +0.0 349,154 - ABZR87_RS17775 0.38 -1.0 349,156 + ABZR87_RS17775 0.38 -0.4 349,156 + ABZR87_RS17775 0.38 +2.6 349,157 - ABZR87_RS17775 0.38 -1.2 349,183 + ABZR87_RS17775 0.40 -0.9 349,465 + ABZR87_RS17775 0.64 -2.1 349,465 + ABZR87_RS17775 0.64 -1.0 349,465 + ABZR87_RS17775 0.64 +2.0 349,466 - ABZR87_RS17775 0.64 +0.5 349,466 - ABZR87_RS17775 0.64 -0.4 349,858 + +0.1 349,858 + +0.4 350,031 + -1.0 350,031 + +2.6 350,031 + -0.1 350,032 - -0.0 350,293 + ABZR87_RS17780 0.25 +0.3 350,294 - ABZR87_RS17780 0.25 +0.4 350,294 - ABZR87_RS17780 0.25 -0.6 350,554 + ABZR87_RS17780 0.55 -1.9 350,555 - ABZR87_RS17780 0.55 -0.0 350,555 - ABZR87_RS17780 0.55 -0.4 350,590 + ABZR87_RS17780 0.59 -3.3 350,591 - ABZR87_RS17780 0.59 -0.4 350,591 - ABZR87_RS17780 0.59 -0.3 350,591 - ABZR87_RS17780 0.59 -0.5 350,997 + +0.6 350,997 + -2.0 350,997 + -0.3 350,997 + +0.7 350,998 - -0.7 350,998 - +0.0 351,222 + ABZR87_RS17785 0.13 +0.1 351,222 + ABZR87_RS17785 0.13 +0.7 351,223 - ABZR87_RS17785 0.13 -1.1 351,223 - ABZR87_RS17785 0.13 +0.3 351,225 + ABZR87_RS17785 0.13 +0.3 351,225 + ABZR87_RS17785 0.13 -0.0 351,226 - ABZR87_RS17785 0.13 -0.6 351,226 - ABZR87_RS17785 0.13 +0.4 351,226 - ABZR87_RS17785 0.13 -1.4 351,226 - ABZR87_RS17785 0.13 -1.0 351,226 - ABZR87_RS17785 0.13 -1.3 351,226 - ABZR87_RS17785 0.13 -0.5 351,226 - ABZR87_RS17785 0.13 -1.4 351,423 + ABZR87_RS17785 0.34 -0.3 351,423 + ABZR87_RS17785 0.34 -0.4 351,424 - ABZR87_RS17785 0.34 -0.6 351,484 + ABZR87_RS17785 0.40 -1.4 351,544 - ABZR87_RS17785 0.46 -0.9 351,904 - ABZR87_RS17785 0.84 +0.9
Or see this region's nucleotide sequence