Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17765 and ABZR87_RS17770 are separated by 195 nucleotides ABZR87_RS17770 and ABZR87_RS17775 are separated by 22 nucleotides
ABZR87_RS17765: ABZR87_RS17765 - MetQ/NlpA family lipoprotein, at 346,314 to 347,126
_RS17765
ABZR87_RS17770: ABZR87_RS17770 - LLM class flavin-dependent oxidoreductase, at 347,322 to 348,668
_RS17770
ABZR87_RS17775: ABZR87_RS17775 - acyl-CoA dehydrogenase family protein, at 348,691 to 349,908
_RS17775
Position (kb) 347
348
349 Strain fitness (log2 ratio) -2
-1
0
1
2 at 346.343 kb on - strand at 346.381 kb on + strand at 346.382 kb on - strand at 346.451 kb on - strand, within ABZR87_RS17765 at 346.644 kb on - strand, within ABZR87_RS17765 at 346.774 kb on + strand, within ABZR87_RS17765 at 346.774 kb on + strand, within ABZR87_RS17765 at 346.787 kb on - strand, within ABZR87_RS17765 at 346.818 kb on + strand, within ABZR87_RS17765 at 346.818 kb on + strand, within ABZR87_RS17765 at 346.818 kb on + strand, within ABZR87_RS17765 at 346.819 kb on - strand, within ABZR87_RS17765 at 346.834 kb on + strand, within ABZR87_RS17765 at 346.834 kb on + strand, within ABZR87_RS17765 at 346.834 kb on + strand, within ABZR87_RS17765 at 347.105 kb on - strand at 347.163 kb on + strand at 347.205 kb on - strand at 347.558 kb on + strand, within ABZR87_RS17770 at 347.558 kb on + strand, within ABZR87_RS17770 at 347.559 kb on - strand, within ABZR87_RS17770 at 347.629 kb on - strand, within ABZR87_RS17770 at 347.775 kb on + strand, within ABZR87_RS17770 at 348.069 kb on + strand, within ABZR87_RS17770 at 348.069 kb on + strand, within ABZR87_RS17770 at 348.070 kb on - strand, within ABZR87_RS17770 at 348.219 kb on + strand, within ABZR87_RS17770 at 348.380 kb on - strand, within ABZR87_RS17770 at 348.591 kb on + strand at 348.591 kb on + strand at 348.690 kb on + strand at 348.690 kb on + strand at 348.691 kb on - strand at 348.696 kb on + strand at 348.696 kb on + strand at 348.970 kb on + strand, within ABZR87_RS17775 at 348.970 kb on + strand, within ABZR87_RS17775 at 348.970 kb on + strand, within ABZR87_RS17775 at 348.970 kb on + strand, within ABZR87_RS17775 at 348.970 kb on + strand, within ABZR87_RS17775 at 349.153 kb on + strand, within ABZR87_RS17775 at 349.154 kb on - strand, within ABZR87_RS17775 at 349.156 kb on + strand, within ABZR87_RS17775 at 349.156 kb on + strand, within ABZR87_RS17775 at 349.157 kb on - strand, within ABZR87_RS17775 at 349.183 kb on + strand, within ABZR87_RS17775 at 349.465 kb on + strand, within ABZR87_RS17775 at 349.465 kb on + strand, within ABZR87_RS17775 at 349.465 kb on + strand, within ABZR87_RS17775 at 349.466 kb on - strand, within ABZR87_RS17775 at 349.466 kb on - strand, within ABZR87_RS17775
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 346,343 - -0.1 346,381 + +0.6 346,382 - +0.1 346,451 - ABZR87_RS17765 0.17 +1.1 346,644 - ABZR87_RS17765 0.41 +0.2 346,774 + ABZR87_RS17765 0.57 +0.1 346,774 + ABZR87_RS17765 0.57 -1.5 346,787 - ABZR87_RS17765 0.58 -1.4 346,818 + ABZR87_RS17765 0.62 +0.3 346,818 + ABZR87_RS17765 0.62 -0.7 346,818 + ABZR87_RS17765 0.62 -2.4 346,819 - ABZR87_RS17765 0.62 -0.8 346,834 + ABZR87_RS17765 0.64 +0.2 346,834 + ABZR87_RS17765 0.64 -0.3 346,834 + ABZR87_RS17765 0.64 -0.5 347,105 - -1.0 347,163 + +1.8 347,205 - +0.3 347,558 + ABZR87_RS17770 0.18 -0.5 347,558 + ABZR87_RS17770 0.18 +0.7 347,559 - ABZR87_RS17770 0.18 +0.0 347,629 - ABZR87_RS17770 0.23 -0.5 347,775 + ABZR87_RS17770 0.34 -0.4 348,069 + ABZR87_RS17770 0.55 +0.6 348,069 + ABZR87_RS17770 0.55 +1.5 348,070 - ABZR87_RS17770 0.56 -0.6 348,219 + ABZR87_RS17770 0.67 +0.2 348,380 - ABZR87_RS17770 0.79 -0.5 348,591 + +1.2 348,591 + -0.3 348,690 + +0.9 348,690 + +0.6 348,691 - -1.1 348,696 + +0.1 348,696 + +0.7 348,970 + ABZR87_RS17775 0.23 -1.4 348,970 + ABZR87_RS17775 0.23 -0.0 348,970 + ABZR87_RS17775 0.23 +1.0 348,970 + ABZR87_RS17775 0.23 +0.3 348,970 + ABZR87_RS17775 0.23 -1.2 349,153 + ABZR87_RS17775 0.38 +0.0 349,154 - ABZR87_RS17775 0.38 -1.0 349,156 + ABZR87_RS17775 0.38 -0.4 349,156 + ABZR87_RS17775 0.38 +2.6 349,157 - ABZR87_RS17775 0.38 -1.2 349,183 + ABZR87_RS17775 0.40 -0.9 349,465 + ABZR87_RS17775 0.64 -2.1 349,465 + ABZR87_RS17775 0.64 -1.0 349,465 + ABZR87_RS17775 0.64 +2.0 349,466 - ABZR87_RS17775 0.64 +0.5 349,466 - ABZR87_RS17775 0.64 -0.4
Or see this region's nucleotide sequence