Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17755 and ABZR87_RS17760 are separated by 73 nucleotides ABZR87_RS17760 and ABZR87_RS17765 are separated by 65 nucleotides ABZR87_RS17765 and ABZR87_RS17770 are separated by 195 nucleotides
ABZR87_RS17755: ABZR87_RS17755 - methionine ABC transporter permease, at 344,799 to 345,443
_RS17755
ABZR87_RS17760: ABZR87_RS17760 - ATP-binding cassette domain-containing protein, at 345,517 to 346,248
_RS17760
ABZR87_RS17765: ABZR87_RS17765 - MetQ/NlpA family lipoprotein, at 346,314 to 347,126
_RS17765
ABZR87_RS17770: ABZR87_RS17770 - LLM class flavin-dependent oxidoreductase, at 347,322 to 348,668
_RS17770
Position (kb) 346
347
348 Strain fitness (log2 ratio) -2
-1
0
1
2 at 345.377 kb on - strand, within ABZR87_RS17755 at 345.430 kb on + strand at 345.450 kb on - strand at 345.885 kb on + strand, within ABZR87_RS17760 at 345.886 kb on - strand, within ABZR87_RS17760 at 346.211 kb on + strand at 346.343 kb on - strand at 346.381 kb on + strand at 346.382 kb on - strand at 346.451 kb on - strand, within ABZR87_RS17765 at 346.644 kb on - strand, within ABZR87_RS17765 at 346.774 kb on + strand, within ABZR87_RS17765 at 346.774 kb on + strand, within ABZR87_RS17765 at 346.787 kb on - strand, within ABZR87_RS17765 at 346.818 kb on + strand, within ABZR87_RS17765 at 346.818 kb on + strand, within ABZR87_RS17765 at 346.818 kb on + strand, within ABZR87_RS17765 at 346.819 kb on - strand, within ABZR87_RS17765 at 346.834 kb on + strand, within ABZR87_RS17765 at 346.834 kb on + strand, within ABZR87_RS17765 at 346.834 kb on + strand, within ABZR87_RS17765 at 347.105 kb on - strand at 347.163 kb on + strand at 347.205 kb on - strand at 347.558 kb on + strand, within ABZR87_RS17770 at 347.558 kb on + strand, within ABZR87_RS17770 at 347.559 kb on - strand, within ABZR87_RS17770 at 347.629 kb on - strand, within ABZR87_RS17770 at 347.775 kb on + strand, within ABZR87_RS17770 at 348.069 kb on + strand, within ABZR87_RS17770 at 348.069 kb on + strand, within ABZR87_RS17770 at 348.070 kb on - strand, within ABZR87_RS17770
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 345,377 - ABZR87_RS17755 0.90 +0.6 345,430 + -0.9 345,450 - -0.1 345,885 + ABZR87_RS17760 0.50 -0.6 345,886 - ABZR87_RS17760 0.50 +0.6 346,211 + -0.6 346,343 - -0.1 346,381 + +0.6 346,382 - +0.1 346,451 - ABZR87_RS17765 0.17 +1.1 346,644 - ABZR87_RS17765 0.41 +0.2 346,774 + ABZR87_RS17765 0.57 +0.1 346,774 + ABZR87_RS17765 0.57 -1.5 346,787 - ABZR87_RS17765 0.58 -1.4 346,818 + ABZR87_RS17765 0.62 +0.3 346,818 + ABZR87_RS17765 0.62 -0.7 346,818 + ABZR87_RS17765 0.62 -2.4 346,819 - ABZR87_RS17765 0.62 -0.8 346,834 + ABZR87_RS17765 0.64 +0.2 346,834 + ABZR87_RS17765 0.64 -0.3 346,834 + ABZR87_RS17765 0.64 -0.5 347,105 - -1.0 347,163 + +1.8 347,205 - +0.3 347,558 + ABZR87_RS17770 0.18 -0.5 347,558 + ABZR87_RS17770 0.18 +0.7 347,559 - ABZR87_RS17770 0.18 +0.0 347,629 - ABZR87_RS17770 0.23 -0.5 347,775 + ABZR87_RS17770 0.34 -0.4 348,069 + ABZR87_RS17770 0.55 +0.6 348,069 + ABZR87_RS17770 0.55 +1.5 348,070 - ABZR87_RS17770 0.56 -0.6
Or see this region's nucleotide sequence