Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17620 and ABZR87_RS17625 are separated by 112 nucleotides ABZR87_RS17625 and ABZR87_RS17630 are separated by 55 nucleotides ABZR87_RS17630 and ABZR87_RS17635 are separated by 94 nucleotides
ABZR87_RS17620: ABZR87_RS17620 - LysR family transcriptional regulator, at 318,459 to 319,397
_RS17620
ABZR87_RS17625: ABZR87_RS17625 - SDR family oxidoreductase, at 319,510 to 320,271
_RS17625
ABZR87_RS17630: ABZR87_RS17630 - alpha/beta hydrolase, at 320,327 to 321,283
_RS17630
ABZR87_RS17635: ABZR87_RS17635 - MFS transporter, at 321,378 to 322,823
_RS17635
Position (kb) 320
321
322 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 319.435 kb on - strand at 319.969 kb on + strand, within ABZR87_RS17625 at 319.969 kb on + strand, within ABZR87_RS17625 at 320.084 kb on - strand, within ABZR87_RS17625 at 320.084 kb on - strand, within ABZR87_RS17625 at 320.269 kb on + strand at 320.285 kb on - strand at 320.285 kb on - strand at 320.504 kb on + strand, within ABZR87_RS17630 at 320.505 kb on - strand, within ABZR87_RS17630 at 320.505 kb on - strand, within ABZR87_RS17630 at 320.505 kb on - strand, within ABZR87_RS17630 at 320.505 kb on - strand, within ABZR87_RS17630 at 320.562 kb on + strand, within ABZR87_RS17630 at 320.562 kb on + strand, within ABZR87_RS17630 at 320.563 kb on - strand, within ABZR87_RS17630 at 320.721 kb on - strand, within ABZR87_RS17630 at 320.721 kb on - strand, within ABZR87_RS17630 at 320.727 kb on - strand, within ABZR87_RS17630 at 320.727 kb on - strand, within ABZR87_RS17630 at 320.727 kb on - strand, within ABZR87_RS17630 at 320.843 kb on + strand, within ABZR87_RS17630 at 320.843 kb on + strand, within ABZR87_RS17630 at 320.843 kb on + strand, within ABZR87_RS17630 at 320.843 kb on + strand, within ABZR87_RS17630 at 320.844 kb on - strand, within ABZR87_RS17630 at 320.844 kb on - strand, within ABZR87_RS17630 at 320.888 kb on + strand, within ABZR87_RS17630 at 320.888 kb on + strand, within ABZR87_RS17630 at 320.888 kb on + strand, within ABZR87_RS17630 at 320.889 kb on - strand, within ABZR87_RS17630 at 320.889 kb on - strand, within ABZR87_RS17630 at 320.889 kb on - strand, within ABZR87_RS17630 at 320.960 kb on + strand, within ABZR87_RS17630 at 320.960 kb on + strand, within ABZR87_RS17630 at 320.961 kb on - strand, within ABZR87_RS17630 at 320.972 kb on + strand, within ABZR87_RS17630 at 321.008 kb on + strand, within ABZR87_RS17630 at 321.009 kb on - strand, within ABZR87_RS17630 at 321.084 kb on + strand, within ABZR87_RS17630 at 321.084 kb on + strand, within ABZR87_RS17630 at 321.085 kb on - strand, within ABZR87_RS17630 at 321.290 kb on + strand at 321.291 kb on - strand at 321.291 kb on - strand at 321.291 kb on - strand at 321.455 kb on + strand at 321.455 kb on + strand at 321.456 kb on - strand at 321.456 kb on - strand at 321.456 kb on - strand at 321.456 kb on - strand at 321.456 kb on - strand at 321.456 kb on - strand at 321.466 kb on + strand at 321.466 kb on + strand at 321.466 kb on + strand at 321.467 kb on - strand at 321.467 kb on - strand at 321.467 kb on - strand at 321.587 kb on - strand, within ABZR87_RS17635 at 321.691 kb on + strand, within ABZR87_RS17635 at 321.742 kb on + strand, within ABZR87_RS17635 at 321.742 kb on + strand, within ABZR87_RS17635 at 321.742 kb on + strand, within ABZR87_RS17635 at 321.742 kb on + strand, within ABZR87_RS17635 at 321.743 kb on - strand, within ABZR87_RS17635 at 321.892 kb on + strand, within ABZR87_RS17635 at 321.892 kb on + strand, within ABZR87_RS17635 at 321.893 kb on - strand, within ABZR87_RS17635 at 321.958 kb on + strand, within ABZR87_RS17635 at 321.958 kb on + strand, within ABZR87_RS17635 at 321.959 kb on - strand, within ABZR87_RS17635 at 321.959 kb on - strand, within ABZR87_RS17635 at 321.959 kb on - strand, within ABZR87_RS17635 at 321.964 kb on + strand, within ABZR87_RS17635 at 321.964 kb on + strand, within ABZR87_RS17635 at 322.255 kb on + strand, within ABZR87_RS17635 at 322.256 kb on - strand, within ABZR87_RS17635 at 322.256 kb on - strand, within ABZR87_RS17635
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 319,435 - -0.2 319,969 + ABZR87_RS17625 0.60 -1.0 319,969 + ABZR87_RS17625 0.60 -0.1 320,084 - ABZR87_RS17625 0.75 -0.9 320,084 - ABZR87_RS17625 0.75 -1.4 320,269 + +0.1 320,285 - -0.5 320,285 - +0.5 320,504 + ABZR87_RS17630 0.18 -1.1 320,505 - ABZR87_RS17630 0.19 -0.5 320,505 - ABZR87_RS17630 0.19 +0.9 320,505 - ABZR87_RS17630 0.19 -2.5 320,505 - ABZR87_RS17630 0.19 -3.0 320,562 + ABZR87_RS17630 0.25 +0.2 320,562 + ABZR87_RS17630 0.25 +0.2 320,563 - ABZR87_RS17630 0.25 -2.9 320,721 - ABZR87_RS17630 0.41 -1.4 320,721 - ABZR87_RS17630 0.41 +1.2 320,727 - ABZR87_RS17630 0.42 +0.2 320,727 - ABZR87_RS17630 0.42 +2.6 320,727 - ABZR87_RS17630 0.42 -1.3 320,843 + ABZR87_RS17630 0.54 -0.5 320,843 + ABZR87_RS17630 0.54 +0.1 320,843 + ABZR87_RS17630 0.54 +1.0 320,843 + ABZR87_RS17630 0.54 -1.1 320,844 - ABZR87_RS17630 0.54 -0.3 320,844 - ABZR87_RS17630 0.54 +0.1 320,888 + ABZR87_RS17630 0.59 +0.3 320,888 + ABZR87_RS17630 0.59 -2.0 320,888 + ABZR87_RS17630 0.59 -1.5 320,889 - ABZR87_RS17630 0.59 +0.1 320,889 - ABZR87_RS17630 0.59 -0.4 320,889 - ABZR87_RS17630 0.59 -1.4 320,960 + ABZR87_RS17630 0.66 -0.7 320,960 + ABZR87_RS17630 0.66 +0.6 320,961 - ABZR87_RS17630 0.66 -1.0 320,972 + ABZR87_RS17630 0.67 -0.9 321,008 + ABZR87_RS17630 0.71 -0.6 321,009 - ABZR87_RS17630 0.71 +0.3 321,084 + ABZR87_RS17630 0.79 -1.1 321,084 + ABZR87_RS17630 0.79 -0.4 321,085 - ABZR87_RS17630 0.79 +0.4 321,290 + -0.6 321,291 - +0.1 321,291 - -0.5 321,291 - -0.2 321,455 + +0.1 321,455 + +0.5 321,456 - -0.2 321,456 - +0.3 321,456 - +0.6 321,456 - -0.5 321,456 - -0.2 321,456 - +1.0 321,466 + -1.1 321,466 + +0.3 321,466 + -1.5 321,467 - -0.6 321,467 - -0.5 321,467 - +0.5 321,587 - ABZR87_RS17635 0.14 -0.1 321,691 + ABZR87_RS17635 0.22 -1.3 321,742 + ABZR87_RS17635 0.25 +0.7 321,742 + ABZR87_RS17635 0.25 +0.1 321,742 + ABZR87_RS17635 0.25 -0.5 321,742 + ABZR87_RS17635 0.25 +0.6 321,743 - ABZR87_RS17635 0.25 -1.4 321,892 + ABZR87_RS17635 0.36 -0.5 321,892 + ABZR87_RS17635 0.36 +0.2 321,893 - ABZR87_RS17635 0.36 +0.5 321,958 + ABZR87_RS17635 0.40 -0.5 321,958 + ABZR87_RS17635 0.40 -0.9 321,959 - ABZR87_RS17635 0.40 -1.7 321,959 - ABZR87_RS17635 0.40 +0.3 321,959 - ABZR87_RS17635 0.40 +0.1 321,964 + ABZR87_RS17635 0.41 +0.8 321,964 + ABZR87_RS17635 0.41 -2.6 322,255 + ABZR87_RS17635 0.61 -0.5 322,256 - ABZR87_RS17635 0.61 -1.8 322,256 - ABZR87_RS17635 0.61 +1.0
Or see this region's nucleotide sequence