Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17590 and ABZR87_RS17595 are separated by 294 nucleotides ABZR87_RS17595 and ABZR87_RS17600 are separated by 285 nucleotides
ABZR87_RS17590: ABZR87_RS17590 - sensor domain-containing diguanylate cyclase, at 309,168 to 310,685
_RS17590
ABZR87_RS17595: ABZR87_RS17595 - hypothetical protein, at 310,980 to 311,174
_RS17595
ABZR87_RS17600: ABZR87_RS17600 - bifunctional lysylphosphatidylglycerol flippase/synthetase MprF, at 311,460 to 314,093
_RS17600
Position (kb) 310
311
312 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 310.019 kb on - strand, within ABZR87_RS17590 at 310.232 kb on + strand, within ABZR87_RS17590 at 310.232 kb on + strand, within ABZR87_RS17590 at 310.232 kb on + strand, within ABZR87_RS17590 at 310.232 kb on + strand, within ABZR87_RS17590 at 310.233 kb on - strand, within ABZR87_RS17590 at 310.233 kb on - strand, within ABZR87_RS17590 at 310.233 kb on - strand, within ABZR87_RS17590 at 310.233 kb on - strand, within ABZR87_RS17590 at 310.234 kb on + strand, within ABZR87_RS17590 at 310.234 kb on + strand, within ABZR87_RS17590 at 310.234 kb on + strand, within ABZR87_RS17590 at 310.234 kb on + strand, within ABZR87_RS17590 at 310.234 kb on + strand, within ABZR87_RS17590 at 310.235 kb on - strand, within ABZR87_RS17590 at 310.235 kb on - strand, within ABZR87_RS17590 at 310.235 kb on - strand, within ABZR87_RS17590 at 310.235 kb on - strand, within ABZR87_RS17590 at 310.235 kb on - strand, within ABZR87_RS17590 at 310.274 kb on - strand, within ABZR87_RS17590 at 310.291 kb on + strand, within ABZR87_RS17590 at 310.291 kb on + strand, within ABZR87_RS17590 at 310.292 kb on - strand, within ABZR87_RS17590 at 310.292 kb on - strand, within ABZR87_RS17590 at 310.292 kb on - strand, within ABZR87_RS17590 at 310.292 kb on - strand, within ABZR87_RS17590 at 310.480 kb on + strand, within ABZR87_RS17590 at 310.480 kb on + strand, within ABZR87_RS17590 at 310.480 kb on + strand, within ABZR87_RS17590 at 310.480 kb on + strand, within ABZR87_RS17590 at 310.480 kb on + strand, within ABZR87_RS17590 at 310.480 kb on + strand, within ABZR87_RS17590 at 310.480 kb on + strand, within ABZR87_RS17590 at 310.480 kb on + strand, within ABZR87_RS17590 at 310.481 kb on - strand, within ABZR87_RS17590 at 310.481 kb on - strand, within ABZR87_RS17590 at 310.481 kb on - strand, within ABZR87_RS17590 at 310.481 kb on - strand, within ABZR87_RS17590 at 310.481 kb on - strand, within ABZR87_RS17590 at 310.481 kb on - strand, within ABZR87_RS17590 at 310.481 kb on - strand, within ABZR87_RS17590 at 310.481 kb on - strand, within ABZR87_RS17590 at 310.481 kb on - strand, within ABZR87_RS17590 at 310.638 kb on + strand at 310.677 kb on + strand at 310.678 kb on - strand at 310.703 kb on + strand at 310.703 kb on + strand at 310.755 kb on - strand at 310.755 kb on - strand at 310.755 kb on - strand at 310.755 kb on - strand at 310.755 kb on - strand at 310.755 kb on - strand at 310.755 kb on - strand at 310.757 kb on + strand at 310.757 kb on + strand at 310.757 kb on + strand at 310.758 kb on - strand at 310.761 kb on + strand at 310.762 kb on - strand at 310.854 kb on + strand at 310.854 kb on + strand at 310.855 kb on - strand at 310.855 kb on - strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.904 kb on + strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.905 kb on - strand at 310.950 kb on + strand at 310.950 kb on + strand at 310.951 kb on - strand at 310.951 kb on - strand at 310.960 kb on - strand at 311.048 kb on + strand, within ABZR87_RS17595 at 311.049 kb on - strand, within ABZR87_RS17595 at 311.172 kb on + strand at 311.172 kb on + strand at 311.173 kb on - strand at 311.218 kb on + strand at 311.218 kb on + strand at 311.218 kb on + strand at 311.218 kb on + strand at 311.218 kb on + strand at 311.218 kb on + strand at 311.218 kb on + strand at 311.218 kb on + strand at 311.219 kb on - strand at 311.219 kb on - strand at 311.219 kb on - strand at 311.219 kb on - strand at 311.219 kb on - strand at 311.219 kb on - strand at 311.219 kb on - strand at 311.311 kb on + strand at 311.655 kb on + strand at 311.655 kb on + strand at 311.655 kb on + strand at 311.733 kb on + strand, within ABZR87_RS17600 at 311.733 kb on + strand, within ABZR87_RS17600 at 311.734 kb on - strand, within ABZR87_RS17600 at 311.734 kb on - strand, within ABZR87_RS17600 at 311.752 kb on - strand, within ABZR87_RS17600 at 311.772 kb on + strand, within ABZR87_RS17600 at 311.773 kb on - strand, within ABZR87_RS17600 at 311.820 kb on - strand, within ABZR87_RS17600 at 311.826 kb on + strand, within ABZR87_RS17600 at 311.826 kb on + strand, within ABZR87_RS17600 at 311.826 kb on + strand, within ABZR87_RS17600 at 311.827 kb on - strand, within ABZR87_RS17600 at 311.827 kb on - strand, within ABZR87_RS17600 at 311.827 kb on - strand, within ABZR87_RS17600 at 311.841 kb on - strand, within ABZR87_RS17600 at 311.889 kb on + strand, within ABZR87_RS17600 at 311.890 kb on - strand, within ABZR87_RS17600 at 312.010 kb on + strand, within ABZR87_RS17600 at 312.091 kb on + strand, within ABZR87_RS17600 at 312.091 kb on + strand, within ABZR87_RS17600 at 312.091 kb on + strand, within ABZR87_RS17600 at 312.091 kb on + strand, within ABZR87_RS17600 at 312.091 kb on + strand, within ABZR87_RS17600 at 312.091 kb on + strand, within ABZR87_RS17600 at 312.091 kb on + strand, within ABZR87_RS17600 at 312.092 kb on - strand, within ABZR87_RS17600
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 310,019 - ABZR87_RS17590 0.56 -0.4 310,232 + ABZR87_RS17590 0.70 +1.0 310,232 + ABZR87_RS17590 0.70 +0.2 310,232 + ABZR87_RS17590 0.70 -0.5 310,232 + ABZR87_RS17590 0.70 +4.2 310,233 - ABZR87_RS17590 0.70 +1.3 310,233 - ABZR87_RS17590 0.70 -2.1 310,233 - ABZR87_RS17590 0.70 -1.5 310,233 - ABZR87_RS17590 0.70 -0.4 310,234 + ABZR87_RS17590 0.70 -0.3 310,234 + ABZR87_RS17590 0.70 -0.6 310,234 + ABZR87_RS17590 0.70 -0.0 310,234 + ABZR87_RS17590 0.70 -0.1 310,234 + ABZR87_RS17590 0.70 -1.0 310,235 - ABZR87_RS17590 0.70 -1.4 310,235 - ABZR87_RS17590 0.70 -0.4 310,235 - ABZR87_RS17590 0.70 +0.6 310,235 - ABZR87_RS17590 0.70 -1.2 310,235 - ABZR87_RS17590 0.70 +0.0 310,274 - ABZR87_RS17590 0.73 +0.0 310,291 + ABZR87_RS17590 0.74 +0.5 310,291 + ABZR87_RS17590 0.74 +0.0 310,292 - ABZR87_RS17590 0.74 -1.7 310,292 - ABZR87_RS17590 0.74 +0.5 310,292 - ABZR87_RS17590 0.74 +0.2 310,292 - ABZR87_RS17590 0.74 -2.7 310,480 + ABZR87_RS17590 0.86 +0.2 310,480 + ABZR87_RS17590 0.86 -0.4 310,480 + ABZR87_RS17590 0.86 +0.3 310,480 + ABZR87_RS17590 0.86 -1.2 310,480 + ABZR87_RS17590 0.86 -0.2 310,480 + ABZR87_RS17590 0.86 +1.9 310,480 + ABZR87_RS17590 0.86 +1.0 310,480 + ABZR87_RS17590 0.86 -0.9 310,481 - ABZR87_RS17590 0.86 +1.2 310,481 - ABZR87_RS17590 0.86 -0.8 310,481 - ABZR87_RS17590 0.86 +0.4 310,481 - ABZR87_RS17590 0.86 +0.1 310,481 - ABZR87_RS17590 0.86 +0.1 310,481 - ABZR87_RS17590 0.86 +0.2 310,481 - ABZR87_RS17590 0.86 -1.0 310,481 - ABZR87_RS17590 0.86 +0.6 310,481 - ABZR87_RS17590 0.86 -0.3 310,638 + +1.7 310,677 + +0.1 310,678 - +1.6 310,703 + -0.1 310,703 + +0.7 310,755 - -0.0 310,755 - +0.6 310,755 - -0.7 310,755 - -2.4 310,755 - -1.1 310,755 - +0.3 310,755 - +2.0 310,757 + +0.6 310,757 + +0.9 310,757 + +0.1 310,758 - +0.2 310,761 + -1.3 310,762 - +0.0 310,854 + +0.1 310,854 + -1.8 310,855 - -0.9 310,855 - +2.6 310,904 + +0.1 310,904 + +0.2 310,904 + +0.3 310,904 + -0.4 310,904 + -0.6 310,904 + -1.6 310,904 + +0.7 310,904 + +0.1 310,904 + +0.7 310,904 + +0.0 310,904 + -1.1 310,904 + -0.2 310,904 + -1.5 310,904 + +1.5 310,904 + -0.7 310,905 - -1.0 310,905 - -0.3 310,905 - -1.9 310,905 - -0.3 310,905 - -1.3 310,905 - -1.1 310,905 - +0.6 310,905 - -0.6 310,905 - -0.9 310,905 - +0.6 310,905 - -0.8 310,905 - +0.1 310,905 - -0.6 310,905 - -0.4 310,950 + -1.5 310,950 + +1.1 310,951 - -0.1 310,951 - -1.0 310,960 - +0.4 311,048 + ABZR87_RS17595 0.35 -2.0 311,049 - ABZR87_RS17595 0.35 -1.4 311,172 + -1.0 311,172 + -0.1 311,173 - +1.0 311,218 + -0.6 311,218 + -0.5 311,218 + -1.0 311,218 + +0.3 311,218 + -0.5 311,218 + +0.4 311,218 + -1.2 311,218 + +0.2 311,219 - +0.0 311,219 - -0.1 311,219 - +0.8 311,219 - +0.0 311,219 - -1.9 311,219 - -0.3 311,219 - -0.3 311,311 + -0.1 311,655 + -1.9 311,655 + -0.2 311,655 + +0.5 311,733 + ABZR87_RS17600 0.10 -1.6 311,733 + ABZR87_RS17600 0.10 -0.3 311,734 - ABZR87_RS17600 0.10 -1.1 311,734 - ABZR87_RS17600 0.10 +0.1 311,752 - ABZR87_RS17600 0.11 -0.7 311,772 + ABZR87_RS17600 0.12 -0.5 311,773 - ABZR87_RS17600 0.12 +0.4 311,820 - ABZR87_RS17600 0.14 -0.3 311,826 + ABZR87_RS17600 0.14 +0.2 311,826 + ABZR87_RS17600 0.14 +0.8 311,826 + ABZR87_RS17600 0.14 -0.1 311,827 - ABZR87_RS17600 0.14 +0.6 311,827 - ABZR87_RS17600 0.14 +0.0 311,827 - ABZR87_RS17600 0.14 -0.2 311,841 - ABZR87_RS17600 0.14 +0.1 311,889 + ABZR87_RS17600 0.16 -0.5 311,890 - ABZR87_RS17600 0.16 -1.5 312,010 + ABZR87_RS17600 0.21 -0.2 312,091 + ABZR87_RS17600 0.24 +0.2 312,091 + ABZR87_RS17600 0.24 +0.6 312,091 + ABZR87_RS17600 0.24 -1.6 312,091 + ABZR87_RS17600 0.24 +0.7 312,091 + ABZR87_RS17600 0.24 +0.0 312,091 + ABZR87_RS17600 0.24 -0.6 312,091 + ABZR87_RS17600 0.24 -1.0 312,092 - ABZR87_RS17600 0.24 -0.4
Or see this region's nucleotide sequence