Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17315

Experiment: Ra1_0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS17305 and ABZR87_RS17310 are separated by 90 nucleotidesABZR87_RS17310 and ABZR87_RS17315 are separated by 116 nucleotidesABZR87_RS17315 and ABZR87_RS17320 are separated by 76 nucleotidesABZR87_RS17320 and ABZR87_RS17325 overlap by 4 nucleotides ABZR87_RS17305: ABZR87_RS17305 - siderophore-interacting protein, at 240,548 to 241,369 _RS17305 ABZR87_RS17310: ABZR87_RS17310 - PadR family transcriptional regulator, at 241,460 to 242,128 _RS17310 ABZR87_RS17315: ABZR87_RS17315 - MarR family transcriptional regulator, at 242,245 to 242,763 _RS17315 ABZR87_RS17320: ABZR87_RS17320 - carboxymuconolactone decarboxylase family protein, at 242,840 to 243,337 _RS17320 ABZR87_RS17325: ABZR87_RS17325 - GNAT family N-acetyltransferase, at 243,334 to 243,783 _RS17325 Position (kb) 242 243Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 241.276 kb on + strand, within ABZR87_RS17305at 241.276 kb on + strand, within ABZR87_RS17305at 241.276 kb on + strand, within ABZR87_RS17305at 241.276 kb on + strand, within ABZR87_RS17305at 241.276 kb on + strand, within ABZR87_RS17305at 241.276 kb on + strand, within ABZR87_RS17305at 241.277 kb on - strand, within ABZR87_RS17305at 241.277 kb on - strand, within ABZR87_RS17305at 241.277 kb on - strand, within ABZR87_RS17305at 241.277 kb on - strand, within ABZR87_RS17305at 241.277 kb on - strand, within ABZR87_RS17305at 241.277 kb on - strand, within ABZR87_RS17305at 241.277 kb on - strand, within ABZR87_RS17305at 241.369 kb on + strandat 241.369 kb on + strandat 241.369 kb on + strandat 241.369 kb on + strandat 241.369 kb on + strandat 241.369 kb on + strandat 241.369 kb on + strandat 241.369 kb on + strandat 241.369 kb on + strandat 241.370 kb on - strandat 241.370 kb on - strandat 241.370 kb on - strandat 241.370 kb on - strandat 241.370 kb on - strandat 241.461 kb on + strandat 241.493 kb on + strandat 241.493 kb on + strandat 241.494 kb on - strandat 241.494 kb on - strandat 241.494 kb on - strandat 241.758 kb on + strand, within ABZR87_RS17310at 241.759 kb on - strand, within ABZR87_RS17310at 241.812 kb on + strand, within ABZR87_RS17310at 241.812 kb on + strand, within ABZR87_RS17310at 241.813 kb on - strand, within ABZR87_RS17310at 241.827 kb on + strand, within ABZR87_RS17310at 241.851 kb on + strand, within ABZR87_RS17310at 241.851 kb on + strand, within ABZR87_RS17310at 241.852 kb on - strand, within ABZR87_RS17310at 241.852 kb on - strand, within ABZR87_RS17310at 241.852 kb on - strand, within ABZR87_RS17310at 241.852 kb on - strand, within ABZR87_RS17310at 241.893 kb on + strand, within ABZR87_RS17310at 241.894 kb on - strand, within ABZR87_RS17310at 242.158 kb on - strandat 242.158 kb on - strandat 242.159 kb on + strandat 242.165 kb on - strandat 242.284 kb on + strandat 242.284 kb on + strandat 242.285 kb on - strandat 242.285 kb on - strandat 242.299 kb on + strand, within ABZR87_RS17315at 242.299 kb on + strand, within ABZR87_RS17315at 242.299 kb on + strand, within ABZR87_RS17315at 242.300 kb on - strand, within ABZR87_RS17315at 242.452 kb on - strand, within ABZR87_RS17315at 242.452 kb on - strand, within ABZR87_RS17315at 242.654 kb on + strand, within ABZR87_RS17315at 242.663 kb on + strand, within ABZR87_RS17315at 242.663 kb on + strand, within ABZR87_RS17315at 242.664 kb on - strand, within ABZR87_RS17315at 242.664 kb on - strand, within ABZR87_RS17315at 242.664 kb on - strand, within ABZR87_RS17315at 242.664 kb on - strand, within ABZR87_RS17315at 242.664 kb on - strand, within ABZR87_RS17315at 242.867 kb on + strandat 242.868 kb on - strandat 242.868 kb on - strandat 242.884 kb on + strandat 243.191 kb on + strand, within ABZR87_RS17320at 243.191 kb on + strand, within ABZR87_RS17320at 243.191 kb on + strand, within ABZR87_RS17320at 243.191 kb on + strand, within ABZR87_RS17320at 243.191 kb on + strand, within ABZR87_RS17320at 243.192 kb on - strand, within ABZR87_RS17320at 243.192 kb on - strand, within ABZR87_RS17320at 243.192 kb on - strand, within ABZR87_RS17320at 243.547 kb on + strand, within ABZR87_RS17325at 243.562 kb on + strand, within ABZR87_RS17325at 243.562 kb on + strand, within ABZR87_RS17325at 243.562 kb on + strand, within ABZR87_RS17325at 243.563 kb on - strand, within ABZR87_RS17325at 243.563 kb on - strand, within ABZR87_RS17325at 243.712 kb on + strand, within ABZR87_RS17325at 243.712 kb on + strand, within ABZR87_RS17325at 243.712 kb on + strand, within ABZR87_RS17325at 243.712 kb on + strand, within ABZR87_RS17325at 243.713 kb on - strand, within ABZR87_RS17325

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ra1_0.1
remove
241,276 + ABZR87_RS17305 0.89 +1.6
241,276 + ABZR87_RS17305 0.89 -2.8
241,276 + ABZR87_RS17305 0.89 +1.0
241,276 + ABZR87_RS17305 0.89 -0.5
241,276 + ABZR87_RS17305 0.89 -0.2
241,276 + ABZR87_RS17305 0.89 +0.4
241,277 - ABZR87_RS17305 0.89 -0.6
241,277 - ABZR87_RS17305 0.89 +0.3
241,277 - ABZR87_RS17305 0.89 -0.4
241,277 - ABZR87_RS17305 0.89 +1.0
241,277 - ABZR87_RS17305 0.89 +0.0
241,277 - ABZR87_RS17305 0.89 -0.4
241,277 - ABZR87_RS17305 0.89 +1.9
241,369 + -1.1
241,369 + -0.2
241,369 + +0.6
241,369 + -0.4
241,369 + -0.7
241,369 + +0.5
241,369 + -0.4
241,369 + -1.1
241,369 + -0.2
241,370 - -1.9
241,370 - +0.0
241,370 - -1.1
241,370 - -1.2
241,370 - -0.4
241,461 + +0.3
241,493 + -1.4
241,493 + +0.6
241,494 - +0.5
241,494 - -0.1
241,494 - +0.7
241,758 + ABZR87_RS17310 0.45 -0.6
241,759 - ABZR87_RS17310 0.45 +1.0
241,812 + ABZR87_RS17310 0.53 +0.1
241,812 + ABZR87_RS17310 0.53 -0.1
241,813 - ABZR87_RS17310 0.53 +1.6
241,827 + ABZR87_RS17310 0.55 +0.9
241,851 + ABZR87_RS17310 0.58 -0.1
241,851 + ABZR87_RS17310 0.58 +0.8
241,852 - ABZR87_RS17310 0.59 -0.2
241,852 - ABZR87_RS17310 0.59 -2.5
241,852 - ABZR87_RS17310 0.59 -0.0
241,852 - ABZR87_RS17310 0.59 +0.8
241,893 + ABZR87_RS17310 0.65 +0.1
241,894 - ABZR87_RS17310 0.65 +0.6
242,158 - -0.6
242,158 - -0.9
242,159 + +0.2
242,165 - +0.3
242,284 + -2.1
242,284 + -2.3
242,285 - -2.4
242,285 - +0.2
242,299 + ABZR87_RS17315 0.10 -1.2
242,299 + ABZR87_RS17315 0.10 -0.7
242,299 + ABZR87_RS17315 0.10 -1.5
242,300 - ABZR87_RS17315 0.11 +1.3
242,452 - ABZR87_RS17315 0.40 -1.7
242,452 - ABZR87_RS17315 0.40 -0.6
242,654 + ABZR87_RS17315 0.79 +0.7
242,663 + ABZR87_RS17315 0.81 -0.3
242,663 + ABZR87_RS17315 0.81 +1.4
242,664 - ABZR87_RS17315 0.81 -1.7
242,664 - ABZR87_RS17315 0.81 +0.5
242,664 - ABZR87_RS17315 0.81 -1.2
242,664 - ABZR87_RS17315 0.81 -2.8
242,664 - ABZR87_RS17315 0.81 -0.8
242,867 + -0.3
242,868 - +0.5
242,868 - -1.1
242,884 + -0.6
243,191 + ABZR87_RS17320 0.70 -0.3
243,191 + ABZR87_RS17320 0.70 -1.7
243,191 + ABZR87_RS17320 0.70 +1.6
243,191 + ABZR87_RS17320 0.70 -0.1
243,191 + ABZR87_RS17320 0.70 -1.4
243,192 - ABZR87_RS17320 0.71 +0.1
243,192 - ABZR87_RS17320 0.71 +2.3
243,192 - ABZR87_RS17320 0.71 -0.4
243,547 + ABZR87_RS17325 0.47 +1.6
243,562 + ABZR87_RS17325 0.51 -0.9
243,562 + ABZR87_RS17325 0.51 -0.5
243,562 + ABZR87_RS17325 0.51 +0.3
243,563 - ABZR87_RS17325 0.51 +1.0
243,563 - ABZR87_RS17325 0.51 -1.3
243,712 + ABZR87_RS17325 0.84 -0.4
243,712 + ABZR87_RS17325 0.84 +0.4
243,712 + ABZR87_RS17325 0.84 +0.9
243,712 + ABZR87_RS17325 0.84 -0.0
243,713 - ABZR87_RS17325 0.84 -0.0

Or see this region's nucleotide sequence