Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16895 and ABZR87_RS16900 are separated by 287 nucleotides ABZR87_RS16900 and ABZR87_RS16905 are separated by 18 nucleotides ABZR87_RS16905 and ABZR87_RS16910 are separated by 110 nucleotides
ABZR87_RS16895: ABZR87_RS16895 - FUSC family protein, at 146,175 to 147,251
_RS16895
ABZR87_RS16900: ABZR87_RS16900 - EAL domain-containing protein, at 147,539 to 149,710
_RS16900
ABZR87_RS16905: ABZR87_RS16905 - hypothetical protein, at 149,729 to 150,361
_RS16905
ABZR87_RS16910: ABZR87_RS16910 - hypothetical protein, at 150,472 to 150,990
_RS16910
Position (kb) 147
148
149
150 Strain fitness (log2 ratio) -2
-1
0
1
2 at 146.579 kb on + strand, within ABZR87_RS16895 at 146.579 kb on + strand, within ABZR87_RS16895 at 146.580 kb on - strand, within ABZR87_RS16895 at 146.644 kb on + strand, within ABZR87_RS16895 at 146.644 kb on + strand, within ABZR87_RS16895 at 146.696 kb on - strand, within ABZR87_RS16895 at 146.704 kb on + strand, within ABZR87_RS16895 at 146.704 kb on + strand, within ABZR87_RS16895 at 146.704 kb on + strand, within ABZR87_RS16895 at 146.704 kb on + strand, within ABZR87_RS16895 at 146.705 kb on - strand, within ABZR87_RS16895 at 146.705 kb on - strand, within ABZR87_RS16895 at 146.705 kb on - strand, within ABZR87_RS16895 at 146.705 kb on - strand, within ABZR87_RS16895 at 146.843 kb on + strand, within ABZR87_RS16895 at 146.845 kb on + strand, within ABZR87_RS16895 at 146.845 kb on + strand, within ABZR87_RS16895 at 146.845 kb on + strand, within ABZR87_RS16895 at 146.845 kb on + strand, within ABZR87_RS16895 at 146.845 kb on + strand, within ABZR87_RS16895 at 146.846 kb on - strand, within ABZR87_RS16895 at 146.846 kb on - strand, within ABZR87_RS16895 at 146.846 kb on - strand, within ABZR87_RS16895 at 146.869 kb on + strand, within ABZR87_RS16895 at 146.891 kb on + strand, within ABZR87_RS16895 at 146.892 kb on - strand, within ABZR87_RS16895 at 146.892 kb on - strand, within ABZR87_RS16895 at 146.892 kb on - strand, within ABZR87_RS16895 at 146.892 kb on - strand, within ABZR87_RS16895 at 146.905 kb on + strand, within ABZR87_RS16895 at 146.905 kb on + strand, within ABZR87_RS16895 at 146.906 kb on - strand, within ABZR87_RS16895 at 146.906 kb on - strand, within ABZR87_RS16895 at 146.906 kb on - strand, within ABZR87_RS16895 at 147.146 kb on - strand at 147.146 kb on - strand at 147.251 kb on + strand at 147.251 kb on + strand at 147.251 kb on + strand at 147.252 kb on - strand at 147.252 kb on - strand at 147.252 kb on - strand at 147.252 kb on - strand at 147.252 kb on - strand at 147.285 kb on + strand at 147.372 kb on + strand at 147.376 kb on + strand at 147.376 kb on + strand at 147.376 kb on + strand at 147.376 kb on + strand at 147.377 kb on - strand at 147.377 kb on - strand at 147.377 kb on - strand at 147.377 kb on - strand at 147.417 kb on + strand at 147.418 kb on - strand at 147.436 kb on + strand at 147.436 kb on + strand at 147.437 kb on - strand at 147.470 kb on + strand at 147.470 kb on + strand at 147.478 kb on + strand at 147.478 kb on + strand at 147.478 kb on + strand at 147.479 kb on - strand at 147.538 kb on + strand at 147.538 kb on + strand at 147.538 kb on + strand at 147.538 kb on + strand at 147.539 kb on - strand at 147.608 kb on + strand at 147.608 kb on + strand at 147.608 kb on + strand at 147.609 kb on - strand at 147.609 kb on - strand at 147.609 kb on - strand at 147.904 kb on + strand, within ABZR87_RS16900 at 147.923 kb on - strand, within ABZR87_RS16900 at 147.923 kb on - strand, within ABZR87_RS16900 at 148.206 kb on - strand, within ABZR87_RS16900 at 148.387 kb on + strand, within ABZR87_RS16900 at 148.387 kb on + strand, within ABZR87_RS16900 at 148.388 kb on - strand, within ABZR87_RS16900 at 148.388 kb on - strand, within ABZR87_RS16900 at 148.388 kb on - strand, within ABZR87_RS16900 at 148.388 kb on - strand, within ABZR87_RS16900 at 148.388 kb on - strand, within ABZR87_RS16900 at 148.388 kb on - strand, within ABZR87_RS16900 at 148.391 kb on + strand, within ABZR87_RS16900 at 148.391 kb on + strand, within ABZR87_RS16900 at 148.391 kb on + strand, within ABZR87_RS16900 at 148.391 kb on + strand, within ABZR87_RS16900 at 148.391 kb on + strand, within ABZR87_RS16900 at 148.391 kb on + strand, within ABZR87_RS16900 at 148.391 kb on + strand, within ABZR87_RS16900 at 148.392 kb on - strand, within ABZR87_RS16900 at 148.392 kb on - strand, within ABZR87_RS16900 at 148.578 kb on - strand, within ABZR87_RS16900 at 148.626 kb on - strand, within ABZR87_RS16900 at 148.665 kb on - strand, within ABZR87_RS16900 at 148.772 kb on + strand, within ABZR87_RS16900 at 148.772 kb on + strand, within ABZR87_RS16900 at 148.773 kb on - strand, within ABZR87_RS16900 at 149.127 kb on + strand, within ABZR87_RS16900 at 149.127 kb on + strand, within ABZR87_RS16900 at 149.128 kb on - strand, within ABZR87_RS16900 at 149.128 kb on - strand, within ABZR87_RS16900 at 149.410 kb on + strand, within ABZR87_RS16900 at 149.410 kb on + strand, within ABZR87_RS16900 at 149.410 kb on + strand, within ABZR87_RS16900 at 149.410 kb on + strand, within ABZR87_RS16900 at 149.410 kb on + strand, within ABZR87_RS16900 at 149.410 kb on + strand, within ABZR87_RS16900 at 149.410 kb on + strand, within ABZR87_RS16900 at 149.410 kb on + strand, within ABZR87_RS16900 at 149.410 kb on + strand, within ABZR87_RS16900 at 149.411 kb on - strand, within ABZR87_RS16900 at 149.411 kb on - strand, within ABZR87_RS16900 at 149.423 kb on + strand, within ABZR87_RS16900 at 149.423 kb on + strand, within ABZR87_RS16900 at 149.424 kb on - strand, within ABZR87_RS16900 at 149.624 kb on + strand at 149.625 kb on - strand at 149.793 kb on + strand, within ABZR87_RS16905 at 149.922 kb on + strand, within ABZR87_RS16905 at 149.922 kb on + strand, within ABZR87_RS16905 at 150.102 kb on + strand, within ABZR87_RS16905 at 150.102 kb on + strand, within ABZR87_RS16905 at 150.103 kb on - strand, within ABZR87_RS16905 at 150.103 kb on - strand, within ABZR87_RS16905 at 150.159 kb on + strand, within ABZR87_RS16905 at 150.160 kb on - strand, within ABZR87_RS16905 at 150.160 kb on - strand, within ABZR87_RS16905 at 150.160 kb on - strand, within ABZR87_RS16905 at 150.160 kb on - strand, within ABZR87_RS16905 at 150.411 kb on + strand at 150.411 kb on + strand at 150.412 kb on + strand at 150.458 kb on + strand at 150.458 kb on + strand at 150.458 kb on + strand at 150.459 kb on - strand at 150.473 kb on + strand at 150.474 kb on - strand at 150.566 kb on + strand, within ABZR87_RS16910 at 150.567 kb on - strand, within ABZR87_RS16910 at 150.567 kb on - strand, within ABZR87_RS16910
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 146,579 + ABZR87_RS16895 0.38 +0.1 146,579 + ABZR87_RS16895 0.38 +1.4 146,580 - ABZR87_RS16895 0.38 +2.1 146,644 + ABZR87_RS16895 0.44 +0.1 146,644 + ABZR87_RS16895 0.44 +1.7 146,696 - ABZR87_RS16895 0.48 -0.1 146,704 + ABZR87_RS16895 0.49 +0.3 146,704 + ABZR87_RS16895 0.49 +0.6 146,704 + ABZR87_RS16895 0.49 +1.4 146,704 + ABZR87_RS16895 0.49 +0.7 146,705 - ABZR87_RS16895 0.49 -0.0 146,705 - ABZR87_RS16895 0.49 +0.4 146,705 - ABZR87_RS16895 0.49 -0.2 146,705 - ABZR87_RS16895 0.49 -1.9 146,843 + ABZR87_RS16895 0.62 +0.6 146,845 + ABZR87_RS16895 0.62 -0.1 146,845 + ABZR87_RS16895 0.62 +0.9 146,845 + ABZR87_RS16895 0.62 +1.9 146,845 + ABZR87_RS16895 0.62 +1.1 146,845 + ABZR87_RS16895 0.62 +2.4 146,846 - ABZR87_RS16895 0.62 -0.3 146,846 - ABZR87_RS16895 0.62 +1.0 146,846 - ABZR87_RS16895 0.62 +0.6 146,869 + ABZR87_RS16895 0.64 +1.8 146,891 + ABZR87_RS16895 0.66 -0.2 146,892 - ABZR87_RS16895 0.67 +0.2 146,892 - ABZR87_RS16895 0.67 -0.3 146,892 - ABZR87_RS16895 0.67 +0.5 146,892 - ABZR87_RS16895 0.67 +0.7 146,905 + ABZR87_RS16895 0.68 +1.3 146,905 + ABZR87_RS16895 0.68 +0.3 146,906 - ABZR87_RS16895 0.68 +0.3 146,906 - ABZR87_RS16895 0.68 +0.2 146,906 - ABZR87_RS16895 0.68 -2.2 147,146 - -1.0 147,146 - +0.9 147,251 + +0.8 147,251 + +2.0 147,251 + +1.1 147,252 - +0.6 147,252 - -0.2 147,252 - -1.2 147,252 - -0.3 147,252 - +0.5 147,285 + +1.4 147,372 + +0.6 147,376 + +1.2 147,376 + +1.9 147,376 + +0.2 147,376 + +1.9 147,377 - +0.7 147,377 - +0.6 147,377 - -0.1 147,377 - -0.3 147,417 + +2.6 147,418 - -1.1 147,436 + +1.6 147,436 + +0.7 147,437 - -0.5 147,470 + +1.6 147,470 + +0.9 147,478 + +0.4 147,478 + +1.6 147,478 + +1.8 147,479 - +0.3 147,538 + +0.1 147,538 + -0.1 147,538 + -1.1 147,538 + -0.0 147,539 - +0.2 147,608 + -0.2 147,608 + -0.7 147,608 + -0.4 147,609 - -1.5 147,609 - -0.1 147,609 - +0.6 147,904 + ABZR87_RS16900 0.17 -0.4 147,923 - ABZR87_RS16900 0.18 +0.0 147,923 - ABZR87_RS16900 0.18 -0.5 148,206 - ABZR87_RS16900 0.31 -2.1 148,387 + ABZR87_RS16900 0.39 -0.3 148,387 + ABZR87_RS16900 0.39 -0.3 148,388 - ABZR87_RS16900 0.39 -0.8 148,388 - ABZR87_RS16900 0.39 +0.7 148,388 - ABZR87_RS16900 0.39 +0.1 148,388 - ABZR87_RS16900 0.39 -0.9 148,388 - ABZR87_RS16900 0.39 +0.5 148,388 - ABZR87_RS16900 0.39 +0.3 148,391 + ABZR87_RS16900 0.39 -0.9 148,391 + ABZR87_RS16900 0.39 -2.3 148,391 + ABZR87_RS16900 0.39 -0.8 148,391 + ABZR87_RS16900 0.39 -1.1 148,391 + ABZR87_RS16900 0.39 -0.1 148,391 + ABZR87_RS16900 0.39 +0.2 148,391 + ABZR87_RS16900 0.39 +0.3 148,392 - ABZR87_RS16900 0.39 -1.6 148,392 - ABZR87_RS16900 0.39 -0.0 148,578 - ABZR87_RS16900 0.48 +1.0 148,626 - ABZR87_RS16900 0.50 +1.7 148,665 - ABZR87_RS16900 0.52 -1.8 148,772 + ABZR87_RS16900 0.57 +0.6 148,772 + ABZR87_RS16900 0.57 -0.2 148,773 - ABZR87_RS16900 0.57 -0.2 149,127 + ABZR87_RS16900 0.73 +0.8 149,127 + ABZR87_RS16900 0.73 -1.0 149,128 - ABZR87_RS16900 0.73 -1.8 149,128 - ABZR87_RS16900 0.73 -0.5 149,410 + ABZR87_RS16900 0.86 +0.1 149,410 + ABZR87_RS16900 0.86 +0.1 149,410 + ABZR87_RS16900 0.86 -0.9 149,410 + ABZR87_RS16900 0.86 -1.7 149,410 + ABZR87_RS16900 0.86 -0.6 149,410 + ABZR87_RS16900 0.86 -1.3 149,410 + ABZR87_RS16900 0.86 +1.8 149,410 + ABZR87_RS16900 0.86 -0.4 149,410 + ABZR87_RS16900 0.86 +0.1 149,411 - ABZR87_RS16900 0.86 +0.0 149,411 - ABZR87_RS16900 0.86 -0.0 149,423 + ABZR87_RS16900 0.87 +0.4 149,423 + ABZR87_RS16900 0.87 -1.3 149,424 - ABZR87_RS16900 0.87 -0.1 149,624 + -0.8 149,625 - -0.3 149,793 + ABZR87_RS16905 0.10 -1.3 149,922 + ABZR87_RS16905 0.30 -1.0 149,922 + ABZR87_RS16905 0.30 -1.1 150,102 + ABZR87_RS16905 0.59 +0.6 150,102 + ABZR87_RS16905 0.59 -1.7 150,103 - ABZR87_RS16905 0.59 -0.6 150,103 - ABZR87_RS16905 0.59 -1.2 150,159 + ABZR87_RS16905 0.68 +0.2 150,160 - ABZR87_RS16905 0.68 -0.3 150,160 - ABZR87_RS16905 0.68 -0.4 150,160 - ABZR87_RS16905 0.68 -0.7 150,160 - ABZR87_RS16905 0.68 -1.0 150,411 + +0.3 150,411 + +0.5 150,412 + -0.0 150,458 + -0.6 150,458 + +0.2 150,458 + -0.5 150,459 - -0.6 150,473 + -0.1 150,474 - -0.8 150,566 + ABZR87_RS16910 0.18 -0.3 150,567 - ABZR87_RS16910 0.18 -0.1 150,567 - ABZR87_RS16910 0.18 +0.4
Or see this region's nucleotide sequence