Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16890 and ABZR87_RS16895 are separated by 90 nucleotides ABZR87_RS16895 and ABZR87_RS16900 are separated by 287 nucleotides
ABZR87_RS16890: ABZR87_RS16890 - LamG-like jellyroll fold domain-containing protein, at 143,877 to 146,084
_RS16890
ABZR87_RS16895: ABZR87_RS16895 - FUSC family protein, at 146,175 to 147,251
_RS16895
ABZR87_RS16900: ABZR87_RS16900 - EAL domain-containing protein, at 147,539 to 149,710
_RS16900
Position (kb) 146
147
148 Strain fitness (log2 ratio) -2
-1
0
1
2 at 145.206 kb on + strand, within ABZR87_RS16890 at 145.206 kb on + strand, within ABZR87_RS16890 at 145.263 kb on + strand, within ABZR87_RS16890 at 145.263 kb on + strand, within ABZR87_RS16890 at 145.341 kb on + strand, within ABZR87_RS16890 at 145.341 kb on + strand, within ABZR87_RS16890 at 145.341 kb on + strand, within ABZR87_RS16890 at 145.349 kb on + strand, within ABZR87_RS16890 at 145.349 kb on + strand, within ABZR87_RS16890 at 145.350 kb on - strand, within ABZR87_RS16890 at 145.350 kb on - strand, within ABZR87_RS16890 at 145.350 kb on - strand, within ABZR87_RS16890 at 145.374 kb on + strand, within ABZR87_RS16890 at 145.375 kb on - strand, within ABZR87_RS16890 at 145.680 kb on + strand, within ABZR87_RS16890 at 145.886 kb on + strand at 145.886 kb on + strand at 145.887 kb on - strand at 145.887 kb on - strand at 145.887 kb on - strand at 145.899 kb on + strand at 145.899 kb on + strand at 145.900 kb on - strand at 145.900 kb on - strand at 145.900 kb on - strand at 145.900 kb on - strand at 146.484 kb on - strand, within ABZR87_RS16895 at 146.579 kb on + strand, within ABZR87_RS16895 at 146.579 kb on + strand, within ABZR87_RS16895 at 146.580 kb on - strand, within ABZR87_RS16895 at 146.644 kb on + strand, within ABZR87_RS16895 at 146.644 kb on + strand, within ABZR87_RS16895 at 146.696 kb on - strand, within ABZR87_RS16895 at 146.704 kb on + strand, within ABZR87_RS16895 at 146.704 kb on + strand, within ABZR87_RS16895 at 146.704 kb on + strand, within ABZR87_RS16895 at 146.704 kb on + strand, within ABZR87_RS16895 at 146.705 kb on - strand, within ABZR87_RS16895 at 146.705 kb on - strand, within ABZR87_RS16895 at 146.705 kb on - strand, within ABZR87_RS16895 at 146.705 kb on - strand, within ABZR87_RS16895 at 146.843 kb on + strand, within ABZR87_RS16895 at 146.845 kb on + strand, within ABZR87_RS16895 at 146.845 kb on + strand, within ABZR87_RS16895 at 146.845 kb on + strand, within ABZR87_RS16895 at 146.845 kb on + strand, within ABZR87_RS16895 at 146.845 kb on + strand, within ABZR87_RS16895 at 146.846 kb on - strand, within ABZR87_RS16895 at 146.846 kb on - strand, within ABZR87_RS16895 at 146.846 kb on - strand, within ABZR87_RS16895 at 146.869 kb on + strand, within ABZR87_RS16895 at 146.891 kb on + strand, within ABZR87_RS16895 at 146.892 kb on - strand, within ABZR87_RS16895 at 146.892 kb on - strand, within ABZR87_RS16895 at 146.892 kb on - strand, within ABZR87_RS16895 at 146.892 kb on - strand, within ABZR87_RS16895 at 146.905 kb on + strand, within ABZR87_RS16895 at 146.905 kb on + strand, within ABZR87_RS16895 at 146.906 kb on - strand, within ABZR87_RS16895 at 146.906 kb on - strand, within ABZR87_RS16895 at 146.906 kb on - strand, within ABZR87_RS16895 at 147.146 kb on - strand at 147.146 kb on - strand at 147.251 kb on + strand at 147.251 kb on + strand at 147.251 kb on + strand at 147.252 kb on - strand at 147.252 kb on - strand at 147.252 kb on - strand at 147.252 kb on - strand at 147.252 kb on - strand at 147.285 kb on + strand at 147.372 kb on + strand at 147.376 kb on + strand at 147.376 kb on + strand at 147.376 kb on + strand at 147.376 kb on + strand at 147.377 kb on - strand at 147.377 kb on - strand at 147.377 kb on - strand at 147.377 kb on - strand at 147.417 kb on + strand at 147.418 kb on - strand at 147.436 kb on + strand at 147.436 kb on + strand at 147.437 kb on - strand at 147.470 kb on + strand at 147.470 kb on + strand at 147.478 kb on + strand at 147.478 kb on + strand at 147.478 kb on + strand at 147.479 kb on - strand at 147.538 kb on + strand at 147.538 kb on + strand at 147.538 kb on + strand at 147.538 kb on + strand at 147.539 kb on - strand at 147.608 kb on + strand at 147.608 kb on + strand at 147.608 kb on + strand at 147.609 kb on - strand at 147.609 kb on - strand at 147.609 kb on - strand at 147.904 kb on + strand, within ABZR87_RS16900 at 147.923 kb on - strand, within ABZR87_RS16900 at 147.923 kb on - strand, within ABZR87_RS16900 at 148.206 kb on - strand, within ABZR87_RS16900
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 145,206 + ABZR87_RS16890 0.60 +1.9 145,206 + ABZR87_RS16890 0.60 -0.0 145,263 + ABZR87_RS16890 0.63 +0.8 145,263 + ABZR87_RS16890 0.63 -0.9 145,341 + ABZR87_RS16890 0.66 -1.3 145,341 + ABZR87_RS16890 0.66 +0.6 145,341 + ABZR87_RS16890 0.66 -0.3 145,349 + ABZR87_RS16890 0.67 +1.0 145,349 + ABZR87_RS16890 0.67 -0.2 145,350 - ABZR87_RS16890 0.67 -0.4 145,350 - ABZR87_RS16890 0.67 -0.6 145,350 - ABZR87_RS16890 0.67 -0.9 145,374 + ABZR87_RS16890 0.68 -0.4 145,375 - ABZR87_RS16890 0.68 -0.2 145,680 + ABZR87_RS16890 0.82 -1.1 145,886 + -0.0 145,886 + +0.1 145,887 - +0.4 145,887 - -1.2 145,887 - -0.4 145,899 + -0.0 145,899 + -0.2 145,900 - -0.4 145,900 - +1.6 145,900 - -1.0 145,900 - +0.0 146,484 - ABZR87_RS16895 0.29 -0.2 146,579 + ABZR87_RS16895 0.38 +0.1 146,579 + ABZR87_RS16895 0.38 +1.4 146,580 - ABZR87_RS16895 0.38 +2.1 146,644 + ABZR87_RS16895 0.44 +0.1 146,644 + ABZR87_RS16895 0.44 +1.7 146,696 - ABZR87_RS16895 0.48 -0.1 146,704 + ABZR87_RS16895 0.49 +0.3 146,704 + ABZR87_RS16895 0.49 +0.6 146,704 + ABZR87_RS16895 0.49 +1.4 146,704 + ABZR87_RS16895 0.49 +0.7 146,705 - ABZR87_RS16895 0.49 -0.0 146,705 - ABZR87_RS16895 0.49 +0.4 146,705 - ABZR87_RS16895 0.49 -0.2 146,705 - ABZR87_RS16895 0.49 -1.9 146,843 + ABZR87_RS16895 0.62 +0.6 146,845 + ABZR87_RS16895 0.62 -0.1 146,845 + ABZR87_RS16895 0.62 +0.9 146,845 + ABZR87_RS16895 0.62 +1.9 146,845 + ABZR87_RS16895 0.62 +1.1 146,845 + ABZR87_RS16895 0.62 +2.4 146,846 - ABZR87_RS16895 0.62 -0.3 146,846 - ABZR87_RS16895 0.62 +1.0 146,846 - ABZR87_RS16895 0.62 +0.6 146,869 + ABZR87_RS16895 0.64 +1.8 146,891 + ABZR87_RS16895 0.66 -0.2 146,892 - ABZR87_RS16895 0.67 +0.2 146,892 - ABZR87_RS16895 0.67 -0.3 146,892 - ABZR87_RS16895 0.67 +0.5 146,892 - ABZR87_RS16895 0.67 +0.7 146,905 + ABZR87_RS16895 0.68 +1.3 146,905 + ABZR87_RS16895 0.68 +0.3 146,906 - ABZR87_RS16895 0.68 +0.3 146,906 - ABZR87_RS16895 0.68 +0.2 146,906 - ABZR87_RS16895 0.68 -2.2 147,146 - -1.0 147,146 - +0.9 147,251 + +0.8 147,251 + +2.0 147,251 + +1.1 147,252 - +0.6 147,252 - -0.2 147,252 - -1.2 147,252 - -0.3 147,252 - +0.5 147,285 + +1.4 147,372 + +0.6 147,376 + +1.2 147,376 + +1.9 147,376 + +0.2 147,376 + +1.9 147,377 - +0.7 147,377 - +0.6 147,377 - -0.1 147,377 - -0.3 147,417 + +2.6 147,418 - -1.1 147,436 + +1.6 147,436 + +0.7 147,437 - -0.5 147,470 + +1.6 147,470 + +0.9 147,478 + +0.4 147,478 + +1.6 147,478 + +1.8 147,479 - +0.3 147,538 + +0.1 147,538 + -0.1 147,538 + -1.1 147,538 + -0.0 147,539 - +0.2 147,608 + -0.2 147,608 + -0.7 147,608 + -0.4 147,609 - -1.5 147,609 - -0.1 147,609 - +0.6 147,904 + ABZR87_RS16900 0.17 -0.4 147,923 - ABZR87_RS16900 0.18 +0.0 147,923 - ABZR87_RS16900 0.18 -0.5 148,206 - ABZR87_RS16900 0.31 -2.1
Or see this region's nucleotide sequence