Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16885 and ABZR87_RS16890 are separated by 269 nucleotides ABZR87_RS16890 and ABZR87_RS16895 are separated by 90 nucleotides
ABZR87_RS16885: ABZR87_RS16885 - hypothetical protein, at 143,062 to 143,607
_RS16885
ABZR87_RS16890: ABZR87_RS16890 - LamG-like jellyroll fold domain-containing protein, at 143,877 to 146,084
_RS16890
ABZR87_RS16895: ABZR87_RS16895 - FUSC family protein, at 146,175 to 147,251
_RS16895
Position (kb) 143
144
145
146
147 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 142.890 kb on + strand at 142.894 kb on + strand at 142.894 kb on + strand at 142.894 kb on + strand at 142.895 kb on - strand at 142.895 kb on - strand at 142.895 kb on - strand at 142.895 kb on - strand at 142.895 kb on - strand at 142.895 kb on - strand at 142.895 kb on - strand at 142.895 kb on - strand at 142.895 kb on - strand at 142.895 kb on - strand at 142.927 kb on + strand at 142.927 kb on + strand at 142.927 kb on + strand at 142.927 kb on + strand at 142.928 kb on - strand at 143.246 kb on + strand, within ABZR87_RS16885 at 143.247 kb on - strand, within ABZR87_RS16885 at 143.507 kb on - strand, within ABZR87_RS16885 at 143.731 kb on + strand at 143.747 kb on + strand at 143.747 kb on + strand at 143.748 kb on - strand at 143.748 kb on - strand at 143.762 kb on + strand at 143.762 kb on + strand at 143.763 kb on - strand at 143.763 kb on - strand at 143.763 kb on - strand at 143.763 kb on - strand at 143.764 kb on + strand at 143.764 kb on + strand at 143.764 kb on + strand at 143.783 kb on + strand at 143.783 kb on + strand at 143.783 kb on + strand at 143.783 kb on + strand at 143.784 kb on - strand at 143.784 kb on - strand at 143.827 kb on + strand at 143.839 kb on + strand at 143.840 kb on - strand at 143.840 kb on - strand at 143.840 kb on - strand at 143.840 kb on - strand at 144.198 kb on + strand, within ABZR87_RS16890 at 144.198 kb on + strand, within ABZR87_RS16890 at 144.220 kb on - strand, within ABZR87_RS16890 at 144.228 kb on + strand, within ABZR87_RS16890 at 144.229 kb on - strand, within ABZR87_RS16890 at 144.260 kb on - strand, within ABZR87_RS16890 at 144.260 kb on - strand, within ABZR87_RS16890 at 144.297 kb on + strand, within ABZR87_RS16890 at 144.298 kb on - strand, within ABZR87_RS16890 at 144.415 kb on + strand, within ABZR87_RS16890 at 144.415 kb on + strand, within ABZR87_RS16890 at 144.416 kb on - strand, within ABZR87_RS16890 at 144.416 kb on - strand, within ABZR87_RS16890 at 144.416 kb on - strand, within ABZR87_RS16890 at 144.416 kb on - strand, within ABZR87_RS16890 at 144.416 kb on - strand, within ABZR87_RS16890 at 144.455 kb on + strand, within ABZR87_RS16890 at 144.456 kb on - strand, within ABZR87_RS16890 at 144.456 kb on - strand, within ABZR87_RS16890 at 144.459 kb on + strand, within ABZR87_RS16890 at 144.459 kb on + strand, within ABZR87_RS16890 at 144.459 kb on + strand, within ABZR87_RS16890 at 144.654 kb on + strand, within ABZR87_RS16890 at 144.657 kb on + strand, within ABZR87_RS16890 at 144.657 kb on + strand, within ABZR87_RS16890 at 144.657 kb on + strand, within ABZR87_RS16890 at 144.657 kb on + strand, within ABZR87_RS16890 at 144.658 kb on - strand, within ABZR87_RS16890 at 144.658 kb on - strand, within ABZR87_RS16890 at 144.720 kb on + strand, within ABZR87_RS16890 at 144.721 kb on - strand, within ABZR87_RS16890 at 144.846 kb on + strand, within ABZR87_RS16890 at 144.846 kb on + strand, within ABZR87_RS16890 at 144.846 kb on + strand, within ABZR87_RS16890 at 144.846 kb on + strand, within ABZR87_RS16890 at 144.885 kb on + strand, within ABZR87_RS16890 at 144.885 kb on + strand, within ABZR87_RS16890 at 144.885 kb on + strand, within ABZR87_RS16890 at 144.885 kb on + strand, within ABZR87_RS16890 at 144.886 kb on - strand, within ABZR87_RS16890 at 144.927 kb on + strand, within ABZR87_RS16890 at 144.927 kb on + strand, within ABZR87_RS16890 at 144.927 kb on + strand, within ABZR87_RS16890 at 144.928 kb on - strand, within ABZR87_RS16890 at 144.939 kb on + strand, within ABZR87_RS16890 at 144.939 kb on + strand, within ABZR87_RS16890 at 145.035 kb on + strand, within ABZR87_RS16890 at 145.035 kb on + strand, within ABZR87_RS16890 at 145.035 kb on + strand, within ABZR87_RS16890 at 145.036 kb on - strand, within ABZR87_RS16890 at 145.044 kb on + strand, within ABZR87_RS16890 at 145.045 kb on - strand, within ABZR87_RS16890 at 145.045 kb on - strand, within ABZR87_RS16890 at 145.111 kb on - strand, within ABZR87_RS16890 at 145.132 kb on - strand, within ABZR87_RS16890 at 145.167 kb on + strand, within ABZR87_RS16890 at 145.167 kb on + strand, within ABZR87_RS16890 at 145.168 kb on - strand, within ABZR87_RS16890 at 145.206 kb on + strand, within ABZR87_RS16890 at 145.206 kb on + strand, within ABZR87_RS16890 at 145.263 kb on + strand, within ABZR87_RS16890 at 145.263 kb on + strand, within ABZR87_RS16890 at 145.341 kb on + strand, within ABZR87_RS16890 at 145.341 kb on + strand, within ABZR87_RS16890 at 145.341 kb on + strand, within ABZR87_RS16890 at 145.349 kb on + strand, within ABZR87_RS16890 at 145.349 kb on + strand, within ABZR87_RS16890 at 145.350 kb on - strand, within ABZR87_RS16890 at 145.350 kb on - strand, within ABZR87_RS16890 at 145.350 kb on - strand, within ABZR87_RS16890 at 145.374 kb on + strand, within ABZR87_RS16890 at 145.375 kb on - strand, within ABZR87_RS16890 at 145.680 kb on + strand, within ABZR87_RS16890 at 145.886 kb on + strand at 145.886 kb on + strand at 145.887 kb on - strand at 145.887 kb on - strand at 145.887 kb on - strand at 145.899 kb on + strand at 145.899 kb on + strand at 145.900 kb on - strand at 145.900 kb on - strand at 145.900 kb on - strand at 145.900 kb on - strand at 146.484 kb on - strand, within ABZR87_RS16895 at 146.579 kb on + strand, within ABZR87_RS16895 at 146.579 kb on + strand, within ABZR87_RS16895 at 146.580 kb on - strand, within ABZR87_RS16895 at 146.644 kb on + strand, within ABZR87_RS16895 at 146.644 kb on + strand, within ABZR87_RS16895 at 146.696 kb on - strand, within ABZR87_RS16895 at 146.704 kb on + strand, within ABZR87_RS16895 at 146.704 kb on + strand, within ABZR87_RS16895 at 146.704 kb on + strand, within ABZR87_RS16895 at 146.704 kb on + strand, within ABZR87_RS16895 at 146.705 kb on - strand, within ABZR87_RS16895 at 146.705 kb on - strand, within ABZR87_RS16895 at 146.705 kb on - strand, within ABZR87_RS16895 at 146.705 kb on - strand, within ABZR87_RS16895 at 146.843 kb on + strand, within ABZR87_RS16895 at 146.845 kb on + strand, within ABZR87_RS16895 at 146.845 kb on + strand, within ABZR87_RS16895 at 146.845 kb on + strand, within ABZR87_RS16895 at 146.845 kb on + strand, within ABZR87_RS16895 at 146.845 kb on + strand, within ABZR87_RS16895 at 146.846 kb on - strand, within ABZR87_RS16895 at 146.846 kb on - strand, within ABZR87_RS16895 at 146.846 kb on - strand, within ABZR87_RS16895 at 146.869 kb on + strand, within ABZR87_RS16895 at 146.891 kb on + strand, within ABZR87_RS16895 at 146.892 kb on - strand, within ABZR87_RS16895 at 146.892 kb on - strand, within ABZR87_RS16895 at 146.892 kb on - strand, within ABZR87_RS16895 at 146.892 kb on - strand, within ABZR87_RS16895 at 146.905 kb on + strand, within ABZR87_RS16895 at 146.905 kb on + strand, within ABZR87_RS16895 at 146.906 kb on - strand, within ABZR87_RS16895 at 146.906 kb on - strand, within ABZR87_RS16895 at 146.906 kb on - strand, within ABZR87_RS16895
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 142,890 + +0.4 142,894 + +0.6 142,894 + +0.2 142,894 + +2.2 142,895 - +2.6 142,895 - -1.1 142,895 - -0.9 142,895 - +0.2 142,895 - +1.0 142,895 - -0.3 142,895 - +0.1 142,895 - -0.8 142,895 - -0.3 142,895 - -1.4 142,927 + -0.4 142,927 + -2.1 142,927 + +1.2 142,927 + -0.3 142,928 - -1.8 143,246 + ABZR87_RS16885 0.34 -2.1 143,247 - ABZR87_RS16885 0.34 -0.2 143,507 - ABZR87_RS16885 0.82 -1.3 143,731 + -0.2 143,747 + +0.4 143,747 + -0.4 143,748 - +0.7 143,748 - +0.6 143,762 + +0.1 143,762 + -0.9 143,763 - -0.0 143,763 - -0.1 143,763 - -0.3 143,763 - +0.5 143,764 + -0.9 143,764 + +0.7 143,764 + +0.5 143,783 + +0.7 143,783 + +1.0 143,783 + +0.2 143,783 + -0.4 143,784 - +0.4 143,784 - +0.7 143,827 + +0.3 143,839 + -1.1 143,840 - +0.2 143,840 - +0.1 143,840 - -0.2 143,840 - +0.2 144,198 + ABZR87_RS16890 0.15 -0.3 144,198 + ABZR87_RS16890 0.15 +0.1 144,220 - ABZR87_RS16890 0.16 +1.1 144,228 + ABZR87_RS16890 0.16 -0.5 144,229 - ABZR87_RS16890 0.16 -0.2 144,260 - ABZR87_RS16890 0.17 +0.1 144,260 - ABZR87_RS16890 0.17 +0.5 144,297 + ABZR87_RS16890 0.19 -1.3 144,298 - ABZR87_RS16890 0.19 -0.2 144,415 + ABZR87_RS16890 0.24 +1.2 144,415 + ABZR87_RS16890 0.24 +0.1 144,416 - ABZR87_RS16890 0.24 -0.0 144,416 - ABZR87_RS16890 0.24 -0.2 144,416 - ABZR87_RS16890 0.24 +0.6 144,416 - ABZR87_RS16890 0.24 +0.7 144,416 - ABZR87_RS16890 0.24 -1.1 144,455 + ABZR87_RS16890 0.26 -0.2 144,456 - ABZR87_RS16890 0.26 +0.3 144,456 - ABZR87_RS16890 0.26 +1.6 144,459 + ABZR87_RS16890 0.26 +1.8 144,459 + ABZR87_RS16890 0.26 +0.3 144,459 + ABZR87_RS16890 0.26 +0.2 144,654 + ABZR87_RS16890 0.35 -0.8 144,657 + ABZR87_RS16890 0.35 +0.4 144,657 + ABZR87_RS16890 0.35 +0.4 144,657 + ABZR87_RS16890 0.35 -0.6 144,657 + ABZR87_RS16890 0.35 -0.4 144,658 - ABZR87_RS16890 0.35 -2.9 144,658 - ABZR87_RS16890 0.35 +0.2 144,720 + ABZR87_RS16890 0.38 +0.3 144,721 - ABZR87_RS16890 0.38 +0.1 144,846 + ABZR87_RS16890 0.44 +1.4 144,846 + ABZR87_RS16890 0.44 +0.3 144,846 + ABZR87_RS16890 0.44 +0.2 144,846 + ABZR87_RS16890 0.44 -1.4 144,885 + ABZR87_RS16890 0.46 -0.8 144,885 + ABZR87_RS16890 0.46 -0.3 144,885 + ABZR87_RS16890 0.46 -0.3 144,885 + ABZR87_RS16890 0.46 +0.2 144,886 - ABZR87_RS16890 0.46 +0.8 144,927 + ABZR87_RS16890 0.48 -0.1 144,927 + ABZR87_RS16890 0.48 -0.8 144,927 + ABZR87_RS16890 0.48 -0.3 144,928 - ABZR87_RS16890 0.48 -0.7 144,939 + ABZR87_RS16890 0.48 +1.0 144,939 + ABZR87_RS16890 0.48 +0.4 145,035 + ABZR87_RS16890 0.52 -1.9 145,035 + ABZR87_RS16890 0.52 -0.0 145,035 + ABZR87_RS16890 0.52 -0.1 145,036 - ABZR87_RS16890 0.52 -1.4 145,044 + ABZR87_RS16890 0.53 -0.2 145,045 - ABZR87_RS16890 0.53 -0.3 145,045 - ABZR87_RS16890 0.53 -0.6 145,111 - ABZR87_RS16890 0.56 +1.5 145,132 - ABZR87_RS16890 0.57 +0.6 145,167 + ABZR87_RS16890 0.58 -0.7 145,167 + ABZR87_RS16890 0.58 -0.1 145,168 - ABZR87_RS16890 0.58 -1.5 145,206 + ABZR87_RS16890 0.60 +1.9 145,206 + ABZR87_RS16890 0.60 -0.0 145,263 + ABZR87_RS16890 0.63 +0.8 145,263 + ABZR87_RS16890 0.63 -0.9 145,341 + ABZR87_RS16890 0.66 -1.3 145,341 + ABZR87_RS16890 0.66 +0.6 145,341 + ABZR87_RS16890 0.66 -0.3 145,349 + ABZR87_RS16890 0.67 +1.0 145,349 + ABZR87_RS16890 0.67 -0.2 145,350 - ABZR87_RS16890 0.67 -0.4 145,350 - ABZR87_RS16890 0.67 -0.6 145,350 - ABZR87_RS16890 0.67 -0.9 145,374 + ABZR87_RS16890 0.68 -0.4 145,375 - ABZR87_RS16890 0.68 -0.2 145,680 + ABZR87_RS16890 0.82 -1.1 145,886 + -0.0 145,886 + +0.1 145,887 - +0.4 145,887 - -1.2 145,887 - -0.4 145,899 + -0.0 145,899 + -0.2 145,900 - -0.4 145,900 - +1.6 145,900 - -1.0 145,900 - +0.0 146,484 - ABZR87_RS16895 0.29 -0.2 146,579 + ABZR87_RS16895 0.38 +0.1 146,579 + ABZR87_RS16895 0.38 +1.4 146,580 - ABZR87_RS16895 0.38 +2.1 146,644 + ABZR87_RS16895 0.44 +0.1 146,644 + ABZR87_RS16895 0.44 +1.7 146,696 - ABZR87_RS16895 0.48 -0.1 146,704 + ABZR87_RS16895 0.49 +0.3 146,704 + ABZR87_RS16895 0.49 +0.6 146,704 + ABZR87_RS16895 0.49 +1.4 146,704 + ABZR87_RS16895 0.49 +0.7 146,705 - ABZR87_RS16895 0.49 -0.0 146,705 - ABZR87_RS16895 0.49 +0.4 146,705 - ABZR87_RS16895 0.49 -0.2 146,705 - ABZR87_RS16895 0.49 -1.9 146,843 + ABZR87_RS16895 0.62 +0.6 146,845 + ABZR87_RS16895 0.62 -0.1 146,845 + ABZR87_RS16895 0.62 +0.9 146,845 + ABZR87_RS16895 0.62 +1.9 146,845 + ABZR87_RS16895 0.62 +1.1 146,845 + ABZR87_RS16895 0.62 +2.4 146,846 - ABZR87_RS16895 0.62 -0.3 146,846 - ABZR87_RS16895 0.62 +1.0 146,846 - ABZR87_RS16895 0.62 +0.6 146,869 + ABZR87_RS16895 0.64 +1.8 146,891 + ABZR87_RS16895 0.66 -0.2 146,892 - ABZR87_RS16895 0.67 +0.2 146,892 - ABZR87_RS16895 0.67 -0.3 146,892 - ABZR87_RS16895 0.67 +0.5 146,892 - ABZR87_RS16895 0.67 +0.7 146,905 + ABZR87_RS16895 0.68 +1.3 146,905 + ABZR87_RS16895 0.68 +0.3 146,906 - ABZR87_RS16895 0.68 +0.3 146,906 - ABZR87_RS16895 0.68 +0.2 146,906 - ABZR87_RS16895 0.68 -2.2
Or see this region's nucleotide sequence