Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16715 and ABZR87_RS16720 are separated by 302 nucleotides ABZR87_RS16720 and ABZR87_RS16725 are separated by 162 nucleotides ABZR87_RS16725 and ABZR87_RS16730 are separated by 82 nucleotides
ABZR87_RS16715: ABZR87_RS16715 - SulP family inorganic anion transporter, at 98,281 to 99,852
_RS16715
ABZR87_RS16720: ABZR87_RS16720 - collagen-like triple helix repeat-containing protein, at 100,155 to 101,300
_RS16720
ABZR87_RS16725: ABZR87_RS16725 - antibiotic biosynthesis monooxygenase, at 101,463 to 101,771
_RS16725
ABZR87_RS16730: ABZR87_RS16730 - 2-methylaconitate cis-trans isomerase PrpF, at 101,854 to 103,038
_RS16730
Position (kb) 100
101
102 Strain fitness (log2 ratio) -2
-1
0
1
2 at 99.207 kb on + strand, within ABZR87_RS16715 at 99.208 kb on - strand, within ABZR87_RS16715 at 99.208 kb on - strand, within ABZR87_RS16715 at 99.242 kb on + strand, within ABZR87_RS16715 at 99.242 kb on + strand, within ABZR87_RS16715 at 99.242 kb on + strand, within ABZR87_RS16715 at 99.242 kb on + strand, within ABZR87_RS16715 at 99.243 kb on - strand, within ABZR87_RS16715 at 99.376 kb on + strand, within ABZR87_RS16715 at 99.376 kb on + strand, within ABZR87_RS16715 at 99.376 kb on + strand, within ABZR87_RS16715 at 99.377 kb on - strand, within ABZR87_RS16715 at 99.377 kb on - strand, within ABZR87_RS16715 at 99.635 kb on - strand, within ABZR87_RS16715 at 99.635 kb on - strand, within ABZR87_RS16715 at 99.635 kb on - strand, within ABZR87_RS16715 at 99.635 kb on - strand, within ABZR87_RS16715 at 99.635 kb on - strand, within ABZR87_RS16715 at 99.691 kb on + strand, within ABZR87_RS16715 at 99.691 kb on + strand, within ABZR87_RS16715 at 99.691 kb on + strand, within ABZR87_RS16715 at 99.691 kb on + strand, within ABZR87_RS16715 at 99.691 kb on + strand, within ABZR87_RS16715 at 99.691 kb on + strand, within ABZR87_RS16715 at 99.691 kb on + strand, within ABZR87_RS16715 at 99.691 kb on + strand, within ABZR87_RS16715 at 99.692 kb on - strand, within ABZR87_RS16715 at 99.855 kb on + strand at 99.855 kb on + strand at 99.856 kb on - strand at 99.856 kb on - strand at 99.856 kb on - strand at 99.856 kb on - strand at 99.856 kb on - strand at 99.856 kb on - strand at 99.887 kb on + strand at 99.907 kb on + strand at 99.907 kb on + strand at 99.907 kb on + strand at 99.907 kb on + strand at 99.989 kb on + strand at 99.989 kb on + strand at 99.990 kb on - strand at 100.074 kb on + strand at 100.105 kb on + strand at 100.106 kb on - strand at 100.134 kb on + strand at 100.535 kb on + strand, within ABZR87_RS16720 at 100.913 kb on + strand, within ABZR87_RS16720 at 100.914 kb on - strand, within ABZR87_RS16720 at 101.377 kb on + strand at 101.377 kb on + strand at 101.377 kb on + strand at 101.389 kb on + strand at 101.389 kb on + strand at 101.389 kb on + strand at 101.390 kb on - strand at 101.415 kb on + strand at 101.415 kb on + strand at 101.415 kb on + strand at 101.415 kb on + strand at 101.416 kb on - strand at 101.416 kb on - strand at 101.416 kb on - strand at 101.416 kb on - strand at 101.416 kb on - strand at 101.416 kb on - strand at 101.420 kb on + strand at 101.420 kb on + strand at 101.421 kb on - strand at 101.421 kb on - strand at 102.173 kb on + strand, within ABZR87_RS16730 at 102.173 kb on + strand, within ABZR87_RS16730 at 102.173 kb on + strand, within ABZR87_RS16730 at 102.174 kb on - strand, within ABZR87_RS16730 at 102.174 kb on - strand, within ABZR87_RS16730 at 102.174 kb on - strand, within ABZR87_RS16730
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 99,207 + ABZR87_RS16715 0.59 -0.1 99,208 - ABZR87_RS16715 0.59 -0.3 99,208 - ABZR87_RS16715 0.59 +0.5 99,242 + ABZR87_RS16715 0.61 +1.8 99,242 + ABZR87_RS16715 0.61 -1.2 99,242 + ABZR87_RS16715 0.61 +0.2 99,242 + ABZR87_RS16715 0.61 -1.2 99,243 - ABZR87_RS16715 0.61 -0.2 99,376 + ABZR87_RS16715 0.70 -1.9 99,376 + ABZR87_RS16715 0.70 +1.6 99,376 + ABZR87_RS16715 0.70 -0.6 99,377 - ABZR87_RS16715 0.70 -0.8 99,377 - ABZR87_RS16715 0.70 +1.6 99,635 - ABZR87_RS16715 0.86 +0.1 99,635 - ABZR87_RS16715 0.86 -0.4 99,635 - ABZR87_RS16715 0.86 -0.4 99,635 - ABZR87_RS16715 0.86 -1.1 99,635 - ABZR87_RS16715 0.86 -0.3 99,691 + ABZR87_RS16715 0.90 +0.3 99,691 + ABZR87_RS16715 0.90 -0.6 99,691 + ABZR87_RS16715 0.90 -0.5 99,691 + ABZR87_RS16715 0.90 +1.1 99,691 + ABZR87_RS16715 0.90 -1.7 99,691 + ABZR87_RS16715 0.90 +0.7 99,691 + ABZR87_RS16715 0.90 -0.4 99,691 + ABZR87_RS16715 0.90 +0.1 99,692 - ABZR87_RS16715 0.90 -0.6 99,855 + +0.2 99,855 + +0.9 99,856 - +0.6 99,856 - +0.5 99,856 - -0.3 99,856 - -0.3 99,856 - +1.6 99,856 - +0.3 99,887 + +0.1 99,907 + -0.2 99,907 + -1.4 99,907 + +0.1 99,907 + -0.6 99,989 + -1.0 99,989 + -0.8 99,990 - -0.8 100,074 + +0.2 100,105 + -0.7 100,106 - +1.6 100,134 + +1.5 100,535 + ABZR87_RS16720 0.33 -0.4 100,913 + ABZR87_RS16720 0.66 -1.2 100,914 - ABZR87_RS16720 0.66 -0.4 101,377 + +0.1 101,377 + +0.2 101,377 + -0.1 101,389 + -0.4 101,389 + -0.8 101,389 + +0.1 101,390 - -0.4 101,415 + +0.1 101,415 + -0.2 101,415 + -1.2 101,415 + -0.5 101,416 - +0.1 101,416 - -0.5 101,416 - +0.0 101,416 - +0.5 101,416 - +0.2 101,416 - -0.8 101,420 + +0.5 101,420 + +0.4 101,421 - -0.4 101,421 - +0.7 102,173 + ABZR87_RS16730 0.27 +2.6 102,173 + ABZR87_RS16730 0.27 -0.7 102,173 + ABZR87_RS16730 0.27 -1.5 102,174 - ABZR87_RS16730 0.27 -0.1 102,174 - ABZR87_RS16730 0.27 +0.0 102,174 - ABZR87_RS16730 0.27 -0.4
Or see this region's nucleotide sequence