Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS15600 and ABZR87_RS15605 overlap by 8 nucleotides ABZR87_RS15605 and ABZR87_RS15610 are separated by 108 nucleotides ABZR87_RS15610 and ABZR87_RS15615 are separated by 46 nucleotides ABZR87_RS15615 and ABZR87_RS15620 are separated by 131 nucleotides
ABZR87_RS15600: ABZR87_RS15600 - RNA polymerase sigma factor RpoD, at 3,288,347 to 3,290,671
_RS15600
ABZR87_RS15605: ABZR87_RS15605 - hypothetical protein, at 3,290,664 to 3,291,044
_RS15605
ABZR87_RS15610: ABZR87_RS15610 - DNA primase, at 3,291,153 to 3,292,964
_RS15610
ABZR87_RS15615: ABZR87_RS15615 - GatB/YqeY domain-containing protein, at 3,293,011 to 3,293,460
_RS15615
ABZR87_RS15620: ABZR87_RS15620 - NAD(P)/FAD-dependent oxidoreductase, at 3,293,592 to 3,294,815
_RS15620
Position (kb)
3291
3292
3293 Strain fitness (log2 ratio)
-1
0
1 at 3290.588 kb on - strand at 3290.838 kb on - strand, within ABZR87_RS15605 at 3290.838 kb on - strand, within ABZR87_RS15605 at 3290.838 kb on - strand, within ABZR87_RS15605 at 3290.838 kb on - strand, within ABZR87_RS15605 at 3291.042 kb on + strand at 3291.043 kb on - strand at 3291.105 kb on - strand at 3291.155 kb on - strand at 3293.194 kb on - strand, within ABZR87_RS15615 at 3293.194 kb on - strand, within ABZR87_RS15615 at 3293.196 kb on - strand, within ABZR87_RS15615 at 3293.196 kb on - strand, within ABZR87_RS15615 at 3293.196 kb on - strand, within ABZR87_RS15615 at 3293.196 kb on - strand, within ABZR87_RS15615 at 3293.196 kb on - strand, within ABZR87_RS15615 at 3293.196 kb on - strand, within ABZR87_RS15615 at 3293.196 kb on - strand, within ABZR87_RS15615 at 3293.196 kb on - strand, within ABZR87_RS15615 at 3293.653 kb on + strand at 3293.654 kb on - strand at 3293.698 kb on + strand at 3293.698 kb on + strand at 3293.698 kb on + strand at 3293.698 kb on + strand at 3293.699 kb on - strand at 3293.699 kb on - strand at 3293.750 kb on + strand, within ABZR87_RS15620 at 3293.750 kb on + strand, within ABZR87_RS15620 at 3293.949 kb on - strand, within ABZR87_RS15620
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 3,290,588 - -0.3 3,290,838 - ABZR87_RS15605 0.46 +0.7 3,290,838 - ABZR87_RS15605 0.46 -0.0 3,290,838 - ABZR87_RS15605 0.46 +1.5 3,290,838 - ABZR87_RS15605 0.46 +0.3 3,291,042 + +0.1 3,291,043 - +0.9 3,291,105 - -0.6 3,291,155 - -0.8 3,293,194 - ABZR87_RS15615 0.41 -0.2 3,293,194 - ABZR87_RS15615 0.41 -0.7 3,293,196 - ABZR87_RS15615 0.41 -0.1 3,293,196 - ABZR87_RS15615 0.41 -0.5 3,293,196 - ABZR87_RS15615 0.41 -0.9 3,293,196 - ABZR87_RS15615 0.41 -0.4 3,293,196 - ABZR87_RS15615 0.41 -1.1 3,293,196 - ABZR87_RS15615 0.41 -0.9 3,293,196 - ABZR87_RS15615 0.41 -0.3 3,293,196 - ABZR87_RS15615 0.41 +1.2 3,293,653 + +1.3 3,293,654 - +0.8 3,293,698 + +0.8 3,293,698 + +0.0 3,293,698 + -0.0 3,293,698 + +0.8 3,293,699 - -1.3 3,293,699 - +0.1 3,293,750 + ABZR87_RS15620 0.13 -0.1 3,293,750 + ABZR87_RS15620 0.13 +0.1 3,293,949 - ABZR87_RS15620 0.29 -0.6
Or see this region's nucleotide sequence