Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15605

Experiment: Ra1_0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS15600 and ABZR87_RS15605 overlap by 8 nucleotidesABZR87_RS15605 and ABZR87_RS15610 are separated by 108 nucleotides ABZR87_RS15600: ABZR87_RS15600 - RNA polymerase sigma factor RpoD, at 3,288,347 to 3,290,671 _RS15600 ABZR87_RS15605: ABZR87_RS15605 - hypothetical protein, at 3,290,664 to 3,291,044 _RS15605 ABZR87_RS15610: ABZR87_RS15610 - DNA primase, at 3,291,153 to 3,292,964 _RS15610 Position (kb) 3290 3291 3292Strain fitness (log2 ratio) -1 0 1at 3290.588 kb on - strandat 3290.838 kb on - strand, within ABZR87_RS15605at 3290.838 kb on - strand, within ABZR87_RS15605at 3290.838 kb on - strand, within ABZR87_RS15605at 3290.838 kb on - strand, within ABZR87_RS15605at 3291.042 kb on + strandat 3291.043 kb on - strandat 3291.105 kb on - strandat 3291.155 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra1_0.1
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3,290,588 - -0.3
3,290,838 - ABZR87_RS15605 0.46 +0.7
3,290,838 - ABZR87_RS15605 0.46 -0.0
3,290,838 - ABZR87_RS15605 0.46 +1.5
3,290,838 - ABZR87_RS15605 0.46 +0.3
3,291,042 + +0.1
3,291,043 - +0.9
3,291,105 - -0.6
3,291,155 - -0.8

Or see this region's nucleotide sequence