Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS15590 and ABZR87_RS15595 are separated by 739 nucleotides ABZR87_RS15595 and ABZR87_RS15600 are separated by 106 nucleotides ABZR87_RS15600 and ABZR87_RS15605 overlap by 8 nucleotides ABZR87_RS15605 and ABZR87_RS15610 are separated by 108 nucleotides
ABZR87_RS15590: ABZR87_RS15590 - DUF2957 domain-containing protein, at 3,285,818 to 3,287,413
_RS15590
ABZR87_RS15595: ABZR87_RS15595 - tRNA-Ile, at 3,288,153 to 3,288,240
_RS15595
ABZR87_RS15600: ABZR87_RS15600 - RNA polymerase sigma factor RpoD, at 3,288,347 to 3,290,671
_RS15600
ABZR87_RS15605: ABZR87_RS15605 - hypothetical protein, at 3,290,664 to 3,291,044
_RS15605
ABZR87_RS15610: ABZR87_RS15610 - DNA primase, at 3,291,153 to 3,292,964
_RS15610
Position (kb)
3288
3289
3290
3291 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3287.350 kb on + strand at 3287.366 kb on + strand at 3287.366 kb on + strand at 3287.367 kb on - strand at 3287.407 kb on + strand at 3287.408 kb on - strand at 3287.408 kb on - strand at 3287.439 kb on - strand at 3287.481 kb on + strand at 3287.482 kb on - strand at 3287.598 kb on + strand at 3287.642 kb on + strand at 3287.642 kb on + strand at 3287.642 kb on + strand at 3287.642 kb on + strand at 3287.643 kb on - strand at 3287.755 kb on + strand at 3287.755 kb on + strand at 3287.756 kb on - strand at 3287.756 kb on - strand at 3287.778 kb on + strand at 3287.779 kb on - strand at 3287.783 kb on + strand at 3287.790 kb on + strand at 3287.794 kb on + strand at 3287.794 kb on + strand at 3287.794 kb on + strand at 3287.794 kb on + strand at 3287.795 kb on - strand at 3287.795 kb on - strand at 3287.798 kb on + strand at 3287.805 kb on - strand at 3287.833 kb on - strand at 3287.833 kb on - strand at 3287.840 kb on - strand at 3287.951 kb on - strand at 3287.996 kb on + strand at 3288.004 kb on + strand at 3288.019 kb on - strand at 3288.020 kb on + strand at 3288.021 kb on - strand at 3288.051 kb on + strand at 3288.051 kb on + strand at 3288.067 kb on + strand at 3288.068 kb on - strand at 3288.099 kb on + strand at 3288.099 kb on + strand at 3288.099 kb on + strand at 3288.099 kb on + strand at 3288.099 kb on + strand at 3288.099 kb on + strand at 3288.099 kb on + strand at 3288.100 kb on - strand at 3288.100 kb on - strand at 3288.100 kb on - strand at 3288.100 kb on - strand at 3288.100 kb on - strand at 3288.100 kb on - strand at 3288.273 kb on - strand at 3290.588 kb on - strand at 3290.838 kb on - strand, within ABZR87_RS15605 at 3290.838 kb on - strand, within ABZR87_RS15605 at 3290.838 kb on - strand, within ABZR87_RS15605 at 3290.838 kb on - strand, within ABZR87_RS15605 at 3291.042 kb on + strand at 3291.043 kb on - strand at 3291.105 kb on - strand at 3291.155 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 3,287,350 + +0.4 3,287,366 + -0.4 3,287,366 + -0.9 3,287,367 - -0.2 3,287,407 + -1.1 3,287,408 - +0.3 3,287,408 - -0.2 3,287,439 - -0.1 3,287,481 + +0.5 3,287,482 - -0.8 3,287,598 + -0.4 3,287,642 + +1.2 3,287,642 + -2.1 3,287,642 + +0.6 3,287,642 + +0.3 3,287,643 - -0.2 3,287,755 + -0.5 3,287,755 + +0.0 3,287,756 - -0.5 3,287,756 - -0.5 3,287,778 + +0.9 3,287,779 - -1.6 3,287,783 + +0.5 3,287,790 + -0.8 3,287,794 + -0.6 3,287,794 + -1.0 3,287,794 + +0.1 3,287,794 + +1.1 3,287,795 - -0.0 3,287,795 - -0.4 3,287,798 + +0.7 3,287,805 - -1.9 3,287,833 - -0.7 3,287,833 - -1.3 3,287,840 - -0.3 3,287,951 - +0.4 3,287,996 + +0.0 3,288,004 + -0.1 3,288,019 - +0.0 3,288,020 + -0.2 3,288,021 - +1.7 3,288,051 + -0.2 3,288,051 + +1.7 3,288,067 + -0.4 3,288,068 - -0.1 3,288,099 + -0.4 3,288,099 + -0.2 3,288,099 + +0.3 3,288,099 + +0.1 3,288,099 + +0.8 3,288,099 + -0.5 3,288,099 + -1.1 3,288,100 - -0.6 3,288,100 - +2.1 3,288,100 - +0.1 3,288,100 - -1.2 3,288,100 - -0.9 3,288,100 - -0.9 3,288,273 - -1.9 3,290,588 - -0.3 3,290,838 - ABZR87_RS15605 0.46 +0.7 3,290,838 - ABZR87_RS15605 0.46 -0.0 3,290,838 - ABZR87_RS15605 0.46 +1.5 3,290,838 - ABZR87_RS15605 0.46 +0.3 3,291,042 + +0.1 3,291,043 - +0.9 3,291,105 - -0.6 3,291,155 - -0.8
Or see this region's nucleotide sequence