Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS14740 and ABZR87_RS14745 are separated by 48 nucleotides ABZR87_RS14745 and ABZR87_RS14750 are separated by 79 nucleotides ABZR87_RS14750 and ABZR87_RS14755 are separated by 102 nucleotides ABZR87_RS14755 and ABZR87_RS14760 are separated by 141 nucleotides
ABZR87_RS14740: ABZR87_RS14740 - HupE/UreJ family protein, at 3,112,718 to 3,113,335
_RS14740
ABZR87_RS14745: ABZR87_RS14745 - urease subunit gamma, at 3,113,384 to 3,113,686
_RS14745
ABZR87_RS14750: ABZR87_RS14750 - urease accessory protein UreD, at 3,113,766 to 3,114,653
_RS14750
ABZR87_RS14755: ABZR87_RS14755 - urea ABC transporter ATP-binding subunit UrtE, at 3,114,756 to 3,115,448
_RS14755
ABZR87_RS14760: ABZR87_RS14760 - urea ABC transporter ATP-binding protein UrtD, at 3,115,590 to 3,116,441
_RS14760
Position (kb)
3113
3114
3115 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3112.873 kb on - strand, within ABZR87_RS14740 at 3113.284 kb on + strand at 3113.284 kb on + strand at 3113.285 kb on - strand at 3113.285 kb on - strand at 3113.285 kb on - strand at 3113.347 kb on + strand at 3113.511 kb on + strand, within ABZR87_RS14745 at 3113.771 kb on + strand at 3113.771 kb on + strand at 3113.772 kb on - strand at 3113.772 kb on - strand at 3113.956 kb on + strand, within ABZR87_RS14750 at 3113.956 kb on + strand, within ABZR87_RS14750 at 3114.361 kb on + strand, within ABZR87_RS14750 at 3114.361 kb on + strand, within ABZR87_RS14750 at 3114.362 kb on - strand, within ABZR87_RS14750 at 3114.691 kb on + strand at 3114.692 kb on - strand at 3114.692 kb on - strand at 3114.794 kb on + strand at 3114.795 kb on - strand at 3114.795 kb on - strand at 3114.844 kb on + strand, within ABZR87_RS14755 at 3114.874 kb on + strand, within ABZR87_RS14755 at 3114.878 kb on - strand, within ABZR87_RS14755 at 3115.105 kb on + strand, within ABZR87_RS14755 at 3115.105 kb on + strand, within ABZR87_RS14755 at 3115.105 kb on + strand, within ABZR87_RS14755 at 3115.106 kb on - strand, within ABZR87_RS14755 at 3115.210 kb on + strand, within ABZR87_RS14755 at 3115.211 kb on - strand, within ABZR87_RS14755 at 3115.211 kb on - strand, within ABZR87_RS14755 at 3115.211 kb on - strand, within ABZR87_RS14755 at 3115.211 kb on - strand, within ABZR87_RS14755 at 3115.211 kb on - strand, within ABZR87_RS14755 at 3115.238 kb on - strand, within ABZR87_RS14755 at 3115.389 kb on - strand at 3115.418 kb on - strand at 3115.420 kb on + strand at 3115.421 kb on - strand at 3115.489 kb on + strand at 3115.527 kb on + strand at 3115.528 kb on - strand at 3115.573 kb on + strand at 3115.591 kb on + strand at 3115.592 kb on - strand at 3115.592 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 3,112,873 - ABZR87_RS14740 0.25 -0.2 3,113,284 + -0.5 3,113,284 + +1.1 3,113,285 - -0.5 3,113,285 - +0.6 3,113,285 - +1.7 3,113,347 + +0.3 3,113,511 + ABZR87_RS14745 0.42 -2.1 3,113,771 + +0.2 3,113,771 + -0.4 3,113,772 - -1.1 3,113,772 - +0.1 3,113,956 + ABZR87_RS14750 0.21 -1.0 3,113,956 + ABZR87_RS14750 0.21 -1.1 3,114,361 + ABZR87_RS14750 0.67 +0.3 3,114,361 + ABZR87_RS14750 0.67 -1.3 3,114,362 - ABZR87_RS14750 0.67 -0.1 3,114,691 + -0.1 3,114,692 - -1.0 3,114,692 - +0.0 3,114,794 + +0.4 3,114,795 - +0.8 3,114,795 - +2.2 3,114,844 + ABZR87_RS14755 0.13 -1.4 3,114,874 + ABZR87_RS14755 0.17 +0.2 3,114,878 - ABZR87_RS14755 0.18 -0.7 3,115,105 + ABZR87_RS14755 0.50 -0.1 3,115,105 + ABZR87_RS14755 0.50 +1.0 3,115,105 + ABZR87_RS14755 0.50 -0.8 3,115,106 - ABZR87_RS14755 0.51 +0.0 3,115,210 + ABZR87_RS14755 0.66 +0.1 3,115,211 - ABZR87_RS14755 0.66 -0.2 3,115,211 - ABZR87_RS14755 0.66 +0.9 3,115,211 - ABZR87_RS14755 0.66 -1.0 3,115,211 - ABZR87_RS14755 0.66 +0.0 3,115,211 - ABZR87_RS14755 0.66 +1.7 3,115,238 - ABZR87_RS14755 0.70 +0.9 3,115,389 - -0.1 3,115,418 - +2.2 3,115,420 + -0.5 3,115,421 - -0.4 3,115,489 + -1.0 3,115,527 + +1.4 3,115,528 - +0.5 3,115,573 + -1.1 3,115,591 + +0.0 3,115,592 - +1.6 3,115,592 - +0.0
Or see this region's nucleotide sequence