Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS14730 and ABZR87_RS14735 are separated by 13 nucleotides ABZR87_RS14735 and ABZR87_RS14740 are separated by 13 nucleotides ABZR87_RS14740 and ABZR87_RS14745 are separated by 48 nucleotides ABZR87_RS14745 and ABZR87_RS14750 are separated by 79 nucleotides
ABZR87_RS14730: ABZR87_RS14730 - urease subunit alpha, at 3,110,667 to 3,112,385
_RS14730
ABZR87_RS14735: ABZR87_RS14735 - urease subunit beta, at 3,112,399 to 3,112,704
_RS14735
ABZR87_RS14740: ABZR87_RS14740 - HupE/UreJ family protein, at 3,112,718 to 3,113,335
_RS14740
ABZR87_RS14745: ABZR87_RS14745 - urease subunit gamma, at 3,113,384 to 3,113,686
_RS14745
ABZR87_RS14750: ABZR87_RS14750 - urease accessory protein UreD, at 3,113,766 to 3,114,653
_RS14750
Position (kb)
3112
3113
3114 Strain fitness (log2 ratio)
-2
-1
0
1 at 3111.823 kb on + strand, within ABZR87_RS14730 at 3111.856 kb on + strand, within ABZR87_RS14730 at 3111.886 kb on + strand, within ABZR87_RS14730 at 3111.886 kb on + strand, within ABZR87_RS14730 at 3111.887 kb on - strand, within ABZR87_RS14730 at 3111.887 kb on - strand, within ABZR87_RS14730 at 3111.887 kb on - strand, within ABZR87_RS14730 at 3112.357 kb on + strand at 3112.358 kb on - strand at 3112.434 kb on - strand, within ABZR87_RS14735 at 3112.434 kb on - strand, within ABZR87_RS14735 at 3112.434 kb on - strand, within ABZR87_RS14735 at 3112.577 kb on + strand, within ABZR87_RS14735 at 3112.577 kb on + strand, within ABZR87_RS14735 at 3112.577 kb on + strand, within ABZR87_RS14735 at 3112.577 kb on + strand, within ABZR87_RS14735 at 3112.578 kb on - strand, within ABZR87_RS14735 at 3112.578 kb on - strand, within ABZR87_RS14735 at 3112.578 kb on - strand, within ABZR87_RS14735 at 3112.578 kb on - strand, within ABZR87_RS14735 at 3112.578 kb on - strand, within ABZR87_RS14735 at 3112.578 kb on - strand, within ABZR87_RS14735 at 3112.586 kb on + strand, within ABZR87_RS14735 at 3112.621 kb on - strand, within ABZR87_RS14735 at 3112.621 kb on - strand, within ABZR87_RS14735 at 3112.873 kb on - strand, within ABZR87_RS14740 at 3113.284 kb on + strand at 3113.284 kb on + strand at 3113.285 kb on - strand at 3113.285 kb on - strand at 3113.285 kb on - strand at 3113.347 kb on + strand at 3113.511 kb on + strand, within ABZR87_RS14745 at 3113.771 kb on + strand at 3113.771 kb on + strand at 3113.772 kb on - strand at 3113.772 kb on - strand at 3113.956 kb on + strand, within ABZR87_RS14750 at 3113.956 kb on + strand, within ABZR87_RS14750
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 3,111,823 + ABZR87_RS14730 0.67 -1.3 3,111,856 + ABZR87_RS14730 0.69 -0.0 3,111,886 + ABZR87_RS14730 0.71 +0.8 3,111,886 + ABZR87_RS14730 0.71 +0.4 3,111,887 - ABZR87_RS14730 0.71 +0.0 3,111,887 - ABZR87_RS14730 0.71 -0.9 3,111,887 - ABZR87_RS14730 0.71 +0.8 3,112,357 + +0.1 3,112,358 - +0.5 3,112,434 - ABZR87_RS14735 0.11 +1.1 3,112,434 - ABZR87_RS14735 0.11 +1.2 3,112,434 - ABZR87_RS14735 0.11 -2.1 3,112,577 + ABZR87_RS14735 0.58 -0.6 3,112,577 + ABZR87_RS14735 0.58 +0.4 3,112,577 + ABZR87_RS14735 0.58 +0.2 3,112,577 + ABZR87_RS14735 0.58 -2.1 3,112,578 - ABZR87_RS14735 0.58 +0.2 3,112,578 - ABZR87_RS14735 0.58 +1.0 3,112,578 - ABZR87_RS14735 0.58 -0.2 3,112,578 - ABZR87_RS14735 0.58 -0.9 3,112,578 - ABZR87_RS14735 0.58 -0.9 3,112,578 - ABZR87_RS14735 0.58 -0.3 3,112,586 + ABZR87_RS14735 0.61 -0.4 3,112,621 - ABZR87_RS14735 0.73 -0.3 3,112,621 - ABZR87_RS14735 0.73 +0.2 3,112,873 - ABZR87_RS14740 0.25 -0.2 3,113,284 + -0.5 3,113,284 + +1.1 3,113,285 - -0.5 3,113,285 - +0.6 3,113,285 - +1.7 3,113,347 + +0.3 3,113,511 + ABZR87_RS14745 0.42 -2.1 3,113,771 + +0.2 3,113,771 + -0.4 3,113,772 - -1.1 3,113,772 - +0.1 3,113,956 + ABZR87_RS14750 0.21 -1.0 3,113,956 + ABZR87_RS14750 0.21 -1.1
Or see this region's nucleotide sequence