Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS12840 and ABZR87_RS12845 are separated by 154 nucleotides ABZR87_RS12845 and ABZR87_RS12850 are separated by 160 nucleotides ABZR87_RS12850 and ABZR87_RS12855 are separated by 101 nucleotides
ABZR87_RS12840: ABZR87_RS12840 - TonB-dependent siderophore receptor, at 2,731,266 to 2,733,401
_RS12840
ABZR87_RS12845: ABZR87_RS12845 - sigma-70 family RNA polymerase sigma factor, at 2,733,556 to 2,734,086
_RS12845
ABZR87_RS12850: ABZR87_RS12850 - hypothetical protein, at 2,734,247 to 2,734,441
_RS12850
ABZR87_RS12855: ABZR87_RS12855 - MFS transporter, at 2,734,543 to 2,735,949
_RS12855
Position (kb)
2733
2734
2735 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2732.596 kb on + strand, within ABZR87_RS12840 at 2732.624 kb on - strand, within ABZR87_RS12840 at 2732.843 kb on - strand, within ABZR87_RS12840 at 2732.905 kb on + strand, within ABZR87_RS12840 at 2732.953 kb on + strand, within ABZR87_RS12840 at 2732.977 kb on + strand, within ABZR87_RS12840 at 2732.977 kb on + strand, within ABZR87_RS12840 at 2732.977 kb on + strand, within ABZR87_RS12840 at 2732.977 kb on + strand, within ABZR87_RS12840 at 2732.977 kb on + strand, within ABZR87_RS12840 at 2732.977 kb on + strand, within ABZR87_RS12840 at 2732.978 kb on - strand, within ABZR87_RS12840 at 2733.061 kb on + strand, within ABZR87_RS12840 at 2733.061 kb on + strand, within ABZR87_RS12840 at 2733.061 kb on + strand, within ABZR87_RS12840 at 2733.062 kb on - strand, within ABZR87_RS12840 at 2733.095 kb on + strand, within ABZR87_RS12840 at 2733.112 kb on + strand, within ABZR87_RS12840 at 2733.113 kb on - strand, within ABZR87_RS12840 at 2733.327 kb on - strand at 2733.416 kb on + strand at 2733.602 kb on + strand at 2733.603 kb on - strand at 2733.672 kb on - strand, within ABZR87_RS12845 at 2733.884 kb on + strand, within ABZR87_RS12845 at 2733.884 kb on + strand, within ABZR87_RS12845 at 2733.885 kb on - strand, within ABZR87_RS12845 at 2733.885 kb on - strand, within ABZR87_RS12845 at 2734.019 kb on + strand, within ABZR87_RS12845 at 2734.028 kb on + strand, within ABZR87_RS12845 at 2734.028 kb on + strand, within ABZR87_RS12845 at 2734.029 kb on - strand, within ABZR87_RS12845 at 2734.029 kb on - strand, within ABZR87_RS12845 at 2734.216 kb on + strand at 2734.216 kb on + strand at 2734.216 kb on + strand at 2734.217 kb on - strand at 2734.253 kb on + strand at 2734.253 kb on + strand at 2734.253 kb on + strand at 2734.254 kb on - strand at 2734.254 kb on - strand at 2734.254 kb on - strand at 2734.254 kb on - strand at 2734.254 kb on - strand at 2734.254 kb on - strand at 2734.482 kb on - strand at 2734.681 kb on + strand at 2734.681 kb on + strand at 2734.681 kb on + strand at 2734.712 kb on + strand, within ABZR87_RS12855 at 2734.712 kb on + strand, within ABZR87_RS12855 at 2734.712 kb on + strand, within ABZR87_RS12855 at 2734.713 kb on - strand, within ABZR87_RS12855 at 2734.713 kb on - strand, within ABZR87_RS12855 at 2734.713 kb on - strand, within ABZR87_RS12855 at 2734.817 kb on + strand, within ABZR87_RS12855 at 2734.818 kb on - strand, within ABZR87_RS12855 at 2734.890 kb on - strand, within ABZR87_RS12855 at 2734.943 kb on + strand, within ABZR87_RS12855 at 2734.943 kb on + strand, within ABZR87_RS12855 at 2734.944 kb on - strand, within ABZR87_RS12855 at 2734.944 kb on - strand, within ABZR87_RS12855 at 2735.077 kb on + strand, within ABZR87_RS12855 at 2735.078 kb on - strand, within ABZR87_RS12855
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 2,732,596 + ABZR87_RS12840 0.62 +0.1 2,732,624 - ABZR87_RS12840 0.64 +1.8 2,732,843 - ABZR87_RS12840 0.74 +0.1 2,732,905 + ABZR87_RS12840 0.77 -0.3 2,732,953 + ABZR87_RS12840 0.79 +0.2 2,732,977 + ABZR87_RS12840 0.80 -0.9 2,732,977 + ABZR87_RS12840 0.80 -0.6 2,732,977 + ABZR87_RS12840 0.80 -1.0 2,732,977 + ABZR87_RS12840 0.80 +2.7 2,732,977 + ABZR87_RS12840 0.80 -1.3 2,732,977 + ABZR87_RS12840 0.80 -0.0 2,732,978 - ABZR87_RS12840 0.80 +3.1 2,733,061 + ABZR87_RS12840 0.84 +1.1 2,733,061 + ABZR87_RS12840 0.84 -0.5 2,733,061 + ABZR87_RS12840 0.84 +0.1 2,733,062 - ABZR87_RS12840 0.84 -0.7 2,733,095 + ABZR87_RS12840 0.86 +2.0 2,733,112 + ABZR87_RS12840 0.86 -1.4 2,733,113 - ABZR87_RS12840 0.86 +1.3 2,733,327 - -0.1 2,733,416 + +2.7 2,733,602 + -0.9 2,733,603 - +0.3 2,733,672 - ABZR87_RS12845 0.22 -1.0 2,733,884 + ABZR87_RS12845 0.62 -0.5 2,733,884 + ABZR87_RS12845 0.62 -1.0 2,733,885 - ABZR87_RS12845 0.62 -1.5 2,733,885 - ABZR87_RS12845 0.62 -0.2 2,734,019 + ABZR87_RS12845 0.87 -0.8 2,734,028 + ABZR87_RS12845 0.89 -0.0 2,734,028 + ABZR87_RS12845 0.89 +2.7 2,734,029 - ABZR87_RS12845 0.89 +0.4 2,734,029 - ABZR87_RS12845 0.89 +0.6 2,734,216 + +0.1 2,734,216 + +0.8 2,734,216 + -0.8 2,734,217 - +0.7 2,734,253 + +0.5 2,734,253 + -0.1 2,734,253 + -1.0 2,734,254 - -0.2 2,734,254 - +1.2 2,734,254 - -0.5 2,734,254 - +2.4 2,734,254 - -2.3 2,734,254 - +2.1 2,734,482 - -0.2 2,734,681 + +0.5 2,734,681 + +1.0 2,734,681 + +0.3 2,734,712 + ABZR87_RS12855 0.12 -1.0 2,734,712 + ABZR87_RS12855 0.12 -0.2 2,734,712 + ABZR87_RS12855 0.12 -0.0 2,734,713 - ABZR87_RS12855 0.12 +0.3 2,734,713 - ABZR87_RS12855 0.12 -0.3 2,734,713 - ABZR87_RS12855 0.12 +1.7 2,734,817 + ABZR87_RS12855 0.19 -2.2 2,734,818 - ABZR87_RS12855 0.20 +1.4 2,734,890 - ABZR87_RS12855 0.25 -1.0 2,734,943 + ABZR87_RS12855 0.28 +0.8 2,734,943 + ABZR87_RS12855 0.28 +0.3 2,734,944 - ABZR87_RS12855 0.29 +1.4 2,734,944 - ABZR87_RS12855 0.29 +1.2 2,735,077 + ABZR87_RS12855 0.38 -0.2 2,735,078 - ABZR87_RS12855 0.38 +0.1
Or see this region's nucleotide sequence