Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS12555 and ABZR87_RS12560 are separated by 89 nucleotides ABZR87_RS12560 and ABZR87_RS12565 are separated by 32 nucleotides ABZR87_RS12565 and ABZR87_RS12570 are separated by 23 nucleotides
ABZR87_RS12555: ABZR87_RS12555 - serine hydrolase, at 2,657,024 to 2,658,427
_RS12555
ABZR87_RS12560: ABZR87_RS12560 - PaaI family thioesterase, at 2,658,517 to 2,658,951
_RS12560
ABZR87_RS12565: ABZR87_RS12565 - SDR family oxidoreductase, at 2,658,984 to 2,659,766
_RS12565
ABZR87_RS12570: ABZR87_RS12570 - acyl-CoA dehydrogenase, at 2,659,790 to 2,661,658
_RS12570
Position (kb)
2658
2659 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2657.560 kb on - strand, within ABZR87_RS12555 at 2657.560 kb on - strand, within ABZR87_RS12555 at 2657.607 kb on + strand, within ABZR87_RS12555 at 2657.608 kb on - strand, within ABZR87_RS12555 at 2657.704 kb on - strand, within ABZR87_RS12555 at 2657.716 kb on - strand, within ABZR87_RS12555 at 2657.766 kb on + strand, within ABZR87_RS12555 at 2657.794 kb on - strand, within ABZR87_RS12555 at 2657.794 kb on - strand, within ABZR87_RS12555 at 2657.794 kb on - strand, within ABZR87_RS12555 at 2657.896 kb on + strand, within ABZR87_RS12555 at 2657.896 kb on + strand, within ABZR87_RS12555 at 2657.896 kb on + strand, within ABZR87_RS12555 at 2657.896 kb on + strand, within ABZR87_RS12555 at 2657.896 kb on + strand, within ABZR87_RS12555 at 2657.896 kb on + strand, within ABZR87_RS12555 at 2657.897 kb on - strand, within ABZR87_RS12555 at 2657.897 kb on - strand, within ABZR87_RS12555 at 2657.897 kb on - strand, within ABZR87_RS12555 at 2657.897 kb on - strand, within ABZR87_RS12555 at 2657.929 kb on - strand, within ABZR87_RS12555 at 2657.929 kb on - strand, within ABZR87_RS12555 at 2657.971 kb on - strand, within ABZR87_RS12555 at 2657.999 kb on - strand, within ABZR87_RS12555 at 2658.986 kb on - strand at 2658.986 kb on - strand at 2659.270 kb on + strand, within ABZR87_RS12565 at 2659.270 kb on + strand, within ABZR87_RS12565 at 2659.270 kb on + strand, within ABZR87_RS12565 at 2659.270 kb on + strand, within ABZR87_RS12565 at 2659.271 kb on - strand, within ABZR87_RS12565 at 2659.345 kb on + strand, within ABZR87_RS12565 at 2659.346 kb on - strand, within ABZR87_RS12565 at 2659.760 kb on + strand at 2659.787 kb on + strand at 2659.787 kb on + strand at 2659.787 kb on + strand at 2659.788 kb on - strand at 2659.792 kb on - strand at 2659.792 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 2,657,560 - ABZR87_RS12555 0.38 -0.0 2,657,560 - ABZR87_RS12555 0.38 -1.6 2,657,607 + ABZR87_RS12555 0.42 +0.5 2,657,608 - ABZR87_RS12555 0.42 +0.1 2,657,704 - ABZR87_RS12555 0.48 +3.7 2,657,716 - ABZR87_RS12555 0.49 -1.7 2,657,766 + ABZR87_RS12555 0.53 -1.0 2,657,794 - ABZR87_RS12555 0.55 -0.1 2,657,794 - ABZR87_RS12555 0.55 +1.7 2,657,794 - ABZR87_RS12555 0.55 -0.6 2,657,896 + ABZR87_RS12555 0.62 +0.1 2,657,896 + ABZR87_RS12555 0.62 +0.3 2,657,896 + ABZR87_RS12555 0.62 +0.5 2,657,896 + ABZR87_RS12555 0.62 -0.6 2,657,896 + ABZR87_RS12555 0.62 +0.0 2,657,896 + ABZR87_RS12555 0.62 -0.2 2,657,897 - ABZR87_RS12555 0.62 -0.8 2,657,897 - ABZR87_RS12555 0.62 +1.0 2,657,897 - ABZR87_RS12555 0.62 +1.7 2,657,897 - ABZR87_RS12555 0.62 -0.5 2,657,929 - ABZR87_RS12555 0.64 -0.4 2,657,929 - ABZR87_RS12555 0.64 +1.0 2,657,971 - ABZR87_RS12555 0.67 -0.2 2,657,999 - ABZR87_RS12555 0.69 +0.2 2,658,986 - -2.7 2,658,986 - -0.2 2,659,270 + ABZR87_RS12565 0.37 -0.6 2,659,270 + ABZR87_RS12565 0.37 +0.3 2,659,270 + ABZR87_RS12565 0.37 +0.9 2,659,270 + ABZR87_RS12565 0.37 -0.1 2,659,271 - ABZR87_RS12565 0.37 +0.8 2,659,345 + ABZR87_RS12565 0.46 -0.2 2,659,346 - ABZR87_RS12565 0.46 +0.5 2,659,760 + +0.4 2,659,787 + +1.4 2,659,787 + +0.8 2,659,787 + -0.2 2,659,788 - +0.1 2,659,792 - +0.9 2,659,792 - -0.7
Or see this region's nucleotide sequence