Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS11750 and ABZR87_RS11755 are separated by 37 nucleotides ABZR87_RS11755 and ABZR87_RS11760 are separated by 14 nucleotides ABZR87_RS11760 and ABZR87_RS11765 are separated by 60 nucleotides ABZR87_RS11765 and ABZR87_RS11770 are separated by 45 nucleotides
ABZR87_RS11750: ABZR87_RS11750 - succinyl-diaminopimelate desuccinylase, at 2,490,679 to 2,491,830
_RS11750
ABZR87_RS11755: ABZR87_RS11755 - arsenate reductase, at 2,491,868 to 2,492,212
_RS11755
ABZR87_RS11760: ABZR87_RS11760 - membrane protein, at 2,492,227 to 2,492,640
_RS11760
ABZR87_RS11765: ABZR87_RS11765 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 2,492,701 to 2,493,528
_RS11765
ABZR87_RS11770: ABZR87_RS11770 - succinyldiaminopimelate transaminase, at 2,493,574 to 2,494,773
_RS11770
Position (kb)
2492
2493 Strain fitness (log2 ratio)
-1
0
1
2 at 2491.870 kb on - strand at 2491.885 kb on - strand at 2492.133 kb on + strand, within ABZR87_RS11755 at 2492.134 kb on - strand, within ABZR87_RS11755 at 2492.436 kb on + strand, within ABZR87_RS11760 at 2492.676 kb on + strand at 2492.676 kb on + strand at 2492.703 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 2,491,870 - +0.3 2,491,885 - +1.7 2,492,133 + ABZR87_RS11755 0.77 +1.9 2,492,134 - ABZR87_RS11755 0.77 -1.4 2,492,436 + ABZR87_RS11760 0.50 -1.2 2,492,676 + +0.0 2,492,676 + -1.0 2,492,703 - +0.4
Or see this region's nucleotide sequence