Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS11315 and ABZR87_RS11320 are separated by 22 nucleotides ABZR87_RS11320 and ABZR87_RS11325 are separated by 341 nucleotides ABZR87_RS11325 and ABZR87_RS11330 are separated by 120 nucleotides ABZR87_RS11330 and ABZR87_RS11335 are separated by 253 nucleotides
ABZR87_RS11315: ABZR87_RS11315 - dipeptidase, at 2,401,729 to 2,403,459
_RS11315
ABZR87_RS11320: ABZR87_RS11320 - cupin domain-containing protein, at 2,403,482 to 2,403,793
_RS11320
ABZR87_RS11325: ABZR87_RS11325 - hypothetical protein, at 2,404,135 to 2,404,320
_RS11325
ABZR87_RS11330: ABZR87_RS11330 - transcriptional repressor LexA, at 2,404,441 to 2,405,091
_RS11330
ABZR87_RS11335: ABZR87_RS11335 - ferredoxin--NADP reductase, at 2,405,345 to 2,406,121
_RS11335
Position (kb)
2404
2405
2406 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2403.547 kb on + strand, within ABZR87_RS11320 at 2403.547 kb on + strand, within ABZR87_RS11320 at 2403.603 kb on + strand, within ABZR87_RS11320 at 2403.603 kb on + strand, within ABZR87_RS11320 at 2403.791 kb on + strand at 2403.792 kb on - strand at 2403.881 kb on + strand at 2403.881 kb on + strand at 2403.881 kb on + strand at 2403.881 kb on + strand at 2403.881 kb on + strand at 2403.882 kb on - strand at 2403.884 kb on + strand at 2403.884 kb on + strand at 2403.884 kb on + strand at 2403.884 kb on + strand at 2403.885 kb on - strand at 2403.885 kb on - strand at 2403.885 kb on - strand at 2403.885 kb on - strand at 2403.885 kb on - strand at 2403.885 kb on - strand at 2403.885 kb on - strand at 2403.895 kb on - strand at 2403.895 kb on - strand at 2403.914 kb on + strand at 2404.048 kb on - strand at 2404.222 kb on - strand, within ABZR87_RS11325 at 2404.241 kb on + strand, within ABZR87_RS11325 at 2404.241 kb on + strand, within ABZR87_RS11325 at 2404.241 kb on + strand, within ABZR87_RS11325 at 2404.242 kb on - strand, within ABZR87_RS11325 at 2404.242 kb on - strand, within ABZR87_RS11325 at 2404.442 kb on + strand at 2404.442 kb on + strand at 2404.443 kb on - strand at 2404.754 kb on + strand, within ABZR87_RS11330 at 2404.755 kb on - strand, within ABZR87_RS11330 at 2404.755 kb on - strand, within ABZR87_RS11330 at 2404.755 kb on - strand, within ABZR87_RS11330 at 2405.057 kb on + strand at 2405.057 kb on + strand at 2405.102 kb on + strand at 2405.103 kb on - strand at 2405.103 kb on - strand at 2405.103 kb on - strand at 2405.105 kb on - strand at 2405.127 kb on + strand at 2405.129 kb on + strand at 2405.210 kb on - strand at 2405.210 kb on - strand at 2405.229 kb on + strand at 2405.229 kb on + strand at 2405.229 kb on + strand at 2405.230 kb on - strand at 2405.269 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 2,403,547 + ABZR87_RS11320 0.21 -0.6 2,403,547 + ABZR87_RS11320 0.21 -0.7 2,403,603 + ABZR87_RS11320 0.39 +1.1 2,403,603 + ABZR87_RS11320 0.39 -0.1 2,403,791 + +3.7 2,403,792 - +0.2 2,403,881 + -1.2 2,403,881 + -2.0 2,403,881 + -0.6 2,403,881 + -1.1 2,403,881 + -0.6 2,403,882 - +0.2 2,403,884 + +1.0 2,403,884 + -2.1 2,403,884 + +0.9 2,403,884 + +0.2 2,403,885 - -1.5 2,403,885 - +0.9 2,403,885 - -1.9 2,403,885 - -1.3 2,403,885 - -0.5 2,403,885 - -0.4 2,403,885 - +0.6 2,403,895 - -0.3 2,403,895 - +0.4 2,403,914 + -1.2 2,404,048 - +0.5 2,404,222 - ABZR87_RS11325 0.47 -0.1 2,404,241 + ABZR87_RS11325 0.57 -0.6 2,404,241 + ABZR87_RS11325 0.57 -0.4 2,404,241 + ABZR87_RS11325 0.57 -0.6 2,404,242 - ABZR87_RS11325 0.58 +0.6 2,404,242 - ABZR87_RS11325 0.58 -2.5 2,404,442 + +0.2 2,404,442 + -1.0 2,404,443 - -0.4 2,404,754 + ABZR87_RS11330 0.48 +1.7 2,404,755 - ABZR87_RS11330 0.48 -2.3 2,404,755 - ABZR87_RS11330 0.48 -2.6 2,404,755 - ABZR87_RS11330 0.48 -0.6 2,405,057 + -1.3 2,405,057 + -0.5 2,405,102 + -1.4 2,405,103 - -0.5 2,405,103 - +0.4 2,405,103 - -1.5 2,405,105 - -0.6 2,405,127 + -1.6 2,405,129 + +2.7 2,405,210 - -0.2 2,405,210 - -1.0 2,405,229 + -0.5 2,405,229 + +1.3 2,405,229 + +0.4 2,405,230 - -0.9 2,405,269 - +2.4
Or see this region's nucleotide sequence