Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS11045 and ABZR87_RS11050 are separated by 11 nucleotides ABZR87_RS11050 and ABZR87_RS11055 are separated by 454 nucleotides ABZR87_RS11055 and ABZR87_RS11060 are separated by 158 nucleotides ABZR87_RS11060 and ABZR87_RS11065 are separated by 7 nucleotides
ABZR87_RS11045: ABZR87_RS11045 - competence/damage-inducible protein A, at 2,341,547 to 2,342,365
_RS11045
ABZR87_RS11050: ABZR87_RS11050 - rhodanese-like domain-containing protein, at 2,342,377 to 2,342,853
_RS11050
ABZR87_RS11055: ABZR87_RS11055 - 3-hydroxylaminophenol mutase, at 2,343,308 to 2,344,723
_RS11055
ABZR87_RS11060: ABZR87_RS11060 - hypothetical protein, at 2,344,882 to 2,345,406
_RS11060
ABZR87_RS11065: ABZR87_RS11065 - nitrogen regulation protein NR(II), at 2,345,414 to 2,346,616
_RS11065
Position (kb)
2343
2344
2345 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5
6
7 at 2342.448 kb on + strand, within ABZR87_RS11050 at 2342.572 kb on + strand, within ABZR87_RS11050 at 2342.778 kb on - strand, within ABZR87_RS11050 at 2342.885 kb on + strand at 2342.973 kb on + strand at 2342.981 kb on + strand at 2342.981 kb on + strand at 2342.981 kb on + strand at 2342.998 kb on - strand at 2343.032 kb on + strand at 2344.803 kb on + strand at 2344.803 kb on + strand at 2344.804 kb on - strand at 2344.824 kb on + strand at 2344.825 kb on - strand at 2344.825 kb on - strand at 2344.970 kb on - strand, within ABZR87_RS11060 at 2344.970 kb on - strand, within ABZR87_RS11060 at 2344.984 kb on + strand, within ABZR87_RS11060 at 2344.984 kb on + strand, within ABZR87_RS11060 at 2344.985 kb on - strand, within ABZR87_RS11060 at 2345.260 kb on + strand, within ABZR87_RS11060 at 2345.260 kb on + strand, within ABZR87_RS11060 at 2345.260 kb on + strand, within ABZR87_RS11060 at 2345.261 kb on - strand, within ABZR87_RS11060 at 2345.302 kb on + strand, within ABZR87_RS11060 at 2345.302 kb on + strand, within ABZR87_RS11060 at 2345.302 kb on + strand, within ABZR87_RS11060 at 2345.311 kb on + strand, within ABZR87_RS11060 at 2345.312 kb on - strand, within ABZR87_RS11060 at 2345.404 kb on + strand at 2345.405 kb on - strand at 2345.409 kb on - strand at 2345.636 kb on + strand, within ABZR87_RS11065 at 2345.637 kb on - strand, within ABZR87_RS11065 at 2345.637 kb on - strand, within ABZR87_RS11065
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 2,342,448 + ABZR87_RS11050 0.15 -0.6 2,342,572 + ABZR87_RS11050 0.41 +0.5 2,342,778 - ABZR87_RS11050 0.84 -0.6 2,342,885 + -0.3 2,342,973 + -0.4 2,342,981 + +0.3 2,342,981 + -0.4 2,342,981 + +1.1 2,342,998 - -0.4 2,343,032 + -0.7 2,344,803 + -0.5 2,344,803 + -1.4 2,344,804 - +0.5 2,344,824 + -1.0 2,344,825 - -1.7 2,344,825 - -0.1 2,344,970 - ABZR87_RS11060 0.17 +5.8 2,344,970 - ABZR87_RS11060 0.17 +6.5 2,344,984 + ABZR87_RS11060 0.19 +6.2 2,344,984 + ABZR87_RS11060 0.19 +6.0 2,344,985 - ABZR87_RS11060 0.20 +6.3 2,345,260 + ABZR87_RS11060 0.72 +6.0 2,345,260 + ABZR87_RS11060 0.72 +6.1 2,345,260 + ABZR87_RS11060 0.72 +6.3 2,345,261 - ABZR87_RS11060 0.72 +5.2 2,345,302 + ABZR87_RS11060 0.80 +6.0 2,345,302 + ABZR87_RS11060 0.80 +6.3 2,345,302 + ABZR87_RS11060 0.80 +6.4 2,345,311 + ABZR87_RS11060 0.82 +6.4 2,345,312 - ABZR87_RS11060 0.82 +7.6 2,345,404 + +1.4 2,345,405 - -0.5 2,345,409 - +2.3 2,345,636 + ABZR87_RS11065 0.18 +0.2 2,345,637 - ABZR87_RS11065 0.19 +1.4 2,345,637 - ABZR87_RS11065 0.19 +0.7
Or see this region's nucleotide sequence