Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS11040 and ABZR87_RS11045 are separated by 21 nucleotides ABZR87_RS11045 and ABZR87_RS11050 are separated by 11 nucleotides ABZR87_RS11050 and ABZR87_RS11055 are separated by 454 nucleotides
ABZR87_RS11040: ABZR87_RS11040 - EI24 domain-containing protein, at 2,340,668 to 2,341,525
_RS11040
ABZR87_RS11045: ABZR87_RS11045 - competence/damage-inducible protein A, at 2,341,547 to 2,342,365
_RS11045
ABZR87_RS11050: ABZR87_RS11050 - rhodanese-like domain-containing protein, at 2,342,377 to 2,342,853
_RS11050
ABZR87_RS11055: ABZR87_RS11055 - 3-hydroxylaminophenol mutase, at 2,343,308 to 2,344,723
_RS11055
Position (kb)
2342
2343 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2341.379 kb on + strand, within ABZR87_RS11040 at 2341.379 kb on + strand, within ABZR87_RS11040 at 2341.379 kb on + strand, within ABZR87_RS11040 at 2341.379 kb on + strand, within ABZR87_RS11040 at 2341.379 kb on + strand, within ABZR87_RS11040 at 2341.380 kb on - strand, within ABZR87_RS11040 at 2341.380 kb on - strand, within ABZR87_RS11040 at 2341.380 kb on - strand, within ABZR87_RS11040 at 2341.394 kb on - strand, within ABZR87_RS11040 at 2341.523 kb on + strand at 2341.667 kb on + strand, within ABZR87_RS11045 at 2341.667 kb on + strand, within ABZR87_RS11045 at 2341.667 kb on + strand, within ABZR87_RS11045 at 2341.701 kb on + strand, within ABZR87_RS11045 at 2341.701 kb on + strand, within ABZR87_RS11045 at 2341.701 kb on + strand, within ABZR87_RS11045 at 2341.701 kb on + strand, within ABZR87_RS11045 at 2341.967 kb on + strand, within ABZR87_RS11045 at 2341.968 kb on - strand, within ABZR87_RS11045 at 2341.968 kb on - strand, within ABZR87_RS11045 at 2341.969 kb on + strand, within ABZR87_RS11045 at 2342.063 kb on + strand, within ABZR87_RS11045 at 2342.063 kb on + strand, within ABZR87_RS11045 at 2342.064 kb on - strand, within ABZR87_RS11045 at 2342.064 kb on - strand, within ABZR87_RS11045 at 2342.231 kb on + strand, within ABZR87_RS11045 at 2342.232 kb on - strand, within ABZR87_RS11045 at 2342.291 kb on + strand at 2342.291 kb on + strand at 2342.291 kb on + strand at 2342.291 kb on + strand at 2342.292 kb on - strand at 2342.292 kb on - strand at 2342.448 kb on + strand, within ABZR87_RS11050 at 2342.572 kb on + strand, within ABZR87_RS11050 at 2342.778 kb on - strand, within ABZR87_RS11050 at 2342.885 kb on + strand at 2342.973 kb on + strand at 2342.981 kb on + strand at 2342.981 kb on + strand at 2342.981 kb on + strand at 2342.998 kb on - strand at 2343.032 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 2,341,379 + ABZR87_RS11040 0.83 +0.2 2,341,379 + ABZR87_RS11040 0.83 -1.2 2,341,379 + ABZR87_RS11040 0.83 +0.7 2,341,379 + ABZR87_RS11040 0.83 +0.4 2,341,379 + ABZR87_RS11040 0.83 +0.9 2,341,380 - ABZR87_RS11040 0.83 +0.4 2,341,380 - ABZR87_RS11040 0.83 -2.6 2,341,380 - ABZR87_RS11040 0.83 +0.4 2,341,394 - ABZR87_RS11040 0.85 +1.2 2,341,523 + -0.8 2,341,667 + ABZR87_RS11045 0.15 -0.6 2,341,667 + ABZR87_RS11045 0.15 -1.1 2,341,667 + ABZR87_RS11045 0.15 -1.0 2,341,701 + ABZR87_RS11045 0.19 +1.8 2,341,701 + ABZR87_RS11045 0.19 -1.0 2,341,701 + ABZR87_RS11045 0.19 -1.4 2,341,701 + ABZR87_RS11045 0.19 +0.7 2,341,967 + ABZR87_RS11045 0.51 +2.7 2,341,968 - ABZR87_RS11045 0.51 +0.1 2,341,968 - ABZR87_RS11045 0.51 -0.7 2,341,969 + ABZR87_RS11045 0.52 -0.7 2,342,063 + ABZR87_RS11045 0.63 -2.7 2,342,063 + ABZR87_RS11045 0.63 +0.7 2,342,064 - ABZR87_RS11045 0.63 +1.1 2,342,064 - ABZR87_RS11045 0.63 -0.4 2,342,231 + ABZR87_RS11045 0.84 -0.2 2,342,232 - ABZR87_RS11045 0.84 -0.3 2,342,291 + +0.0 2,342,291 + +0.2 2,342,291 + +1.7 2,342,291 + +0.7 2,342,292 - -0.7 2,342,292 - -0.2 2,342,448 + ABZR87_RS11050 0.15 -0.6 2,342,572 + ABZR87_RS11050 0.41 +0.5 2,342,778 - ABZR87_RS11050 0.84 -0.6 2,342,885 + -0.3 2,342,973 + -0.4 2,342,981 + +0.3 2,342,981 + -0.4 2,342,981 + +1.1 2,342,998 - -0.4 2,343,032 + -0.7
Or see this region's nucleotide sequence