Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS10935 and ABZR87_RS10940 are separated by 299 nucleotides ABZR87_RS10940 and ABZR87_RS10945 are separated by 73 nucleotides
ABZR87_RS10935: ABZR87_RS10935 - ribosome biogenesis GTPase Der, at 2,315,975 to 2,317,318
_RS10935
ABZR87_RS10940: ABZR87_RS10940 - RNA chaperone Hfq, at 2,317,618 to 2,317,857
_RS10940
ABZR87_RS10945: ABZR87_RS10945 - GTPase HflX, at 2,317,931 to 2,319,184
_RS10945
Position (kb)
2317
2318 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2317.404 kb on + strand at 2317.405 kb on - strand at 2317.447 kb on - strand at 2317.481 kb on + strand at 2317.574 kb on + strand at 2317.599 kb on + strand at 2317.599 kb on + strand at 2317.601 kb on + strand at 2317.920 kb on + strand at 2317.920 kb on + strand at 2317.921 kb on - strand at 2317.921 kb on - strand at 2317.921 kb on - strand at 2317.921 kb on - strand at 2317.921 kb on - strand at 2318.241 kb on + strand, within ABZR87_RS10945 at 2318.242 kb on - strand, within ABZR87_RS10945 at 2318.242 kb on - strand, within ABZR87_RS10945 at 2318.242 kb on - strand, within ABZR87_RS10945 at 2318.258 kb on - strand, within ABZR87_RS10945 at 2318.258 kb on - strand, within ABZR87_RS10945 at 2318.258 kb on - strand, within ABZR87_RS10945 at 2318.555 kb on + strand, within ABZR87_RS10945 at 2318.555 kb on + strand, within ABZR87_RS10945 at 2318.555 kb on + strand, within ABZR87_RS10945 at 2318.556 kb on - strand, within ABZR87_RS10945 at 2318.557 kb on + strand, within ABZR87_RS10945 at 2318.557 kb on + strand, within ABZR87_RS10945 at 2318.557 kb on + strand, within ABZR87_RS10945 at 2318.558 kb on - strand, within ABZR87_RS10945 at 2318.558 kb on - strand, within ABZR87_RS10945 at 2318.558 kb on - strand, within ABZR87_RS10945 at 2318.610 kb on - strand, within ABZR87_RS10945 at 2318.610 kb on - strand, within ABZR87_RS10945 at 2318.661 kb on - strand, within ABZR87_RS10945 at 2318.695 kb on + strand, within ABZR87_RS10945
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 2,317,404 + +1.8 2,317,405 - -2.5 2,317,447 - -1.1 2,317,481 + +2.9 2,317,574 + -2.5 2,317,599 + -1.3 2,317,599 + -2.3 2,317,601 + -2.5 2,317,920 + -1.8 2,317,920 + -1.8 2,317,921 - -0.8 2,317,921 - -2.1 2,317,921 - -1.9 2,317,921 - -0.4 2,317,921 - -1.9 2,318,241 + ABZR87_RS10945 0.25 -1.2 2,318,242 - ABZR87_RS10945 0.25 -1.4 2,318,242 - ABZR87_RS10945 0.25 -0.1 2,318,242 - ABZR87_RS10945 0.25 -1.5 2,318,258 - ABZR87_RS10945 0.26 -3.5 2,318,258 - ABZR87_RS10945 0.26 -1.3 2,318,258 - ABZR87_RS10945 0.26 -1.9 2,318,555 + ABZR87_RS10945 0.50 -2.2 2,318,555 + ABZR87_RS10945 0.50 +0.4 2,318,555 + ABZR87_RS10945 0.50 -1.3 2,318,556 - ABZR87_RS10945 0.50 -2.9 2,318,557 + ABZR87_RS10945 0.50 -2.3 2,318,557 + ABZR87_RS10945 0.50 -0.5 2,318,557 + ABZR87_RS10945 0.50 -0.2 2,318,558 - ABZR87_RS10945 0.50 -0.2 2,318,558 - ABZR87_RS10945 0.50 +0.9 2,318,558 - ABZR87_RS10945 0.50 -1.4 2,318,610 - ABZR87_RS10945 0.54 -1.1 2,318,610 - ABZR87_RS10945 0.54 +0.5 2,318,661 - ABZR87_RS10945 0.58 -2.4 2,318,695 + ABZR87_RS10945 0.61 +0.7
Or see this region's nucleotide sequence