Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS10770 and ABZR87_RS10775 are separated by 188 nucleotides ABZR87_RS10775 and ABZR87_RS10780 are separated by 216 nucleotides
ABZR87_RS10770: ABZR87_RS10770 - transcription termination factor Rho, at 2,278,413 to 2,279,675
_RS10770
ABZR87_RS10775: ABZR87_RS10775 - thioredoxin TrxA, at 2,279,864 to 2,280,190
_RS10775
ABZR87_RS10780: ABZR87_RS10780 - PD-(D/E)XK nuclease family protein, at 2,280,407 to 2,283,250
_RS10780
Position (kb)
2279
2280
2281 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2279.778 kb on + strand at 2279.865 kb on + strand at 2279.865 kb on + strand at 2279.866 kb on - strand at 2280.242 kb on - strand at 2280.242 kb on - strand at 2280.242 kb on - strand at 2280.242 kb on - strand at 2280.242 kb on - strand at 2280.247 kb on - strand at 2280.247 kb on - strand at 2280.254 kb on + strand at 2280.270 kb on + strand at 2280.270 kb on + strand at 2280.271 kb on - strand at 2280.303 kb on + strand at 2280.303 kb on + strand at 2280.303 kb on + strand at 2280.303 kb on + strand at 2280.303 kb on + strand at 2280.304 kb on - strand at 2280.304 kb on - strand at 2280.304 kb on - strand at 2280.304 kb on - strand at 2280.305 kb on + strand at 2280.305 kb on + strand at 2280.305 kb on + strand at 2280.305 kb on + strand at 2280.305 kb on + strand at 2280.305 kb on + strand at 2280.305 kb on + strand at 2280.305 kb on + strand at 2280.306 kb on - strand at 2280.306 kb on - strand at 2280.308 kb on + strand at 2280.309 kb on - strand at 2280.353 kb on - strand at 2280.387 kb on + strand at 2280.387 kb on + strand at 2280.389 kb on + strand at 2280.390 kb on - strand at 2280.390 kb on - strand at 2280.398 kb on - strand at 2280.398 kb on - strand at 2280.509 kb on - strand at 2280.509 kb on - strand at 2280.509 kb on - strand at 2280.538 kb on - strand at 2280.836 kb on - strand, within ABZR87_RS10780 at 2280.899 kb on + strand, within ABZR87_RS10780 at 2280.900 kb on - strand, within ABZR87_RS10780 at 2280.900 kb on - strand, within ABZR87_RS10780
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 2,279,778 + +2.7 2,279,865 + +1.2 2,279,865 + -1.4 2,279,866 - +1.4 2,280,242 - +2.7 2,280,242 - +0.3 2,280,242 - +1.1 2,280,242 - -1.8 2,280,242 - -2.2 2,280,247 - +0.2 2,280,247 - -0.2 2,280,254 + -0.2 2,280,270 + -0.8 2,280,270 + -0.2 2,280,271 - +0.3 2,280,303 + +2.7 2,280,303 + +1.0 2,280,303 + +0.8 2,280,303 + +0.3 2,280,303 + -0.2 2,280,304 - -0.6 2,280,304 - -0.5 2,280,304 - +0.1 2,280,304 - -0.0 2,280,305 + -0.3 2,280,305 + +0.0 2,280,305 + -1.2 2,280,305 + -1.3 2,280,305 + -0.3 2,280,305 + +0.3 2,280,305 + +0.5 2,280,305 + +0.0 2,280,306 - +0.1 2,280,306 - -1.4 2,280,308 + +1.1 2,280,309 - -0.9 2,280,353 - -0.6 2,280,387 + -1.5 2,280,387 + +0.4 2,280,389 + +1.4 2,280,390 - -1.2 2,280,390 - -0.8 2,280,398 - -0.3 2,280,398 - -0.3 2,280,509 - +2.3 2,280,509 - +0.7 2,280,509 - +0.4 2,280,538 - +1.7 2,280,836 - ABZR87_RS10780 0.15 -0.6 2,280,899 + ABZR87_RS10780 0.17 +0.4 2,280,900 - ABZR87_RS10780 0.17 +1.1 2,280,900 - ABZR87_RS10780 0.17 +0.4
Or see this region's nucleotide sequence