Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS10535 and ABZR87_RS10540 are separated by 10 nucleotides ABZR87_RS10540 and ABZR87_RS10545 are separated by 118 nucleotides ABZR87_RS10545 and ABZR87_RS10550 are separated by 61 nucleotides
ABZR87_RS10535: ABZR87_RS10535 - tryptophan--tRNA ligase, at 2,228,893 to 2,230,095
_RS10535
ABZR87_RS10540: ABZR87_RS10540 - class I SAM-dependent methyltransferase, at 2,230,106 to 2,230,672
_RS10540
ABZR87_RS10545: ABZR87_RS10545 - 4-hydroxy-tetrahydrodipicolinate synthase, at 2,230,791 to 2,231,675
_RS10545
ABZR87_RS10550: ABZR87_RS10550 - outer membrane protein assembly factor BamC, at 2,231,737 to 2,232,933
_RS10550
Position (kb)
2230
2231
2232 Strain fitness (log2 ratio)
-2
-1
0
1 at 2230.087 kb on + strand at 2230.088 kb on - strand at 2230.088 kb on - strand at 2230.096 kb on + strand at 2230.097 kb on - strand at 2230.132 kb on + strand at 2230.133 kb on - strand at 2230.394 kb on + strand, within ABZR87_RS10540 at 2230.395 kb on - strand, within ABZR87_RS10540 at 2230.395 kb on - strand, within ABZR87_RS10540 at 2230.457 kb on + strand, within ABZR87_RS10540 at 2230.457 kb on + strand, within ABZR87_RS10540 at 2230.458 kb on - strand, within ABZR87_RS10540 at 2230.458 kb on - strand, within ABZR87_RS10540 at 2230.458 kb on - strand, within ABZR87_RS10540 at 2230.571 kb on + strand, within ABZR87_RS10540 at 2230.571 kb on + strand, within ABZR87_RS10540 at 2230.572 kb on - strand, within ABZR87_RS10540 at 2230.608 kb on - strand, within ABZR87_RS10540 at 2230.662 kb on - strand at 2230.693 kb on + strand at 2230.693 kb on + strand at 2230.745 kb on + strand at 2230.746 kb on - strand at 2230.760 kb on + strand at 2231.702 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 2,230,087 + +0.7 2,230,088 - +0.9 2,230,088 - +0.4 2,230,096 + -0.8 2,230,097 - -0.4 2,230,132 + -2.6 2,230,133 - -1.3 2,230,394 + ABZR87_RS10540 0.51 +1.5 2,230,395 - ABZR87_RS10540 0.51 -1.6 2,230,395 - ABZR87_RS10540 0.51 -0.3 2,230,457 + ABZR87_RS10540 0.62 -0.1 2,230,457 + ABZR87_RS10540 0.62 -0.3 2,230,458 - ABZR87_RS10540 0.62 -2.0 2,230,458 - ABZR87_RS10540 0.62 -0.4 2,230,458 - ABZR87_RS10540 0.62 -2.1 2,230,571 + ABZR87_RS10540 0.82 -0.3 2,230,571 + ABZR87_RS10540 0.82 -0.4 2,230,572 - ABZR87_RS10540 0.82 +0.2 2,230,608 - ABZR87_RS10540 0.89 -0.8 2,230,662 - -0.6 2,230,693 + +0.7 2,230,693 + -0.2 2,230,745 + +0.7 2,230,746 - +0.7 2,230,760 + -0.5 2,231,702 + -0.2
Or see this region's nucleotide sequence