Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS10090 and ABZR87_RS10095 overlap by 20 nucleotides ABZR87_RS10095 and ABZR87_RS10100 overlap by 8 nucleotides ABZR87_RS10100 and ABZR87_RS10105 are separated by 36 nucleotides
ABZR87_RS10090: ABZR87_RS10090 - RluA family pseudouridine synthase, at 2,145,471 to 2,146,505
_RS10090
ABZR87_RS10095: ABZR87_RS10095 - HAD-IA family hydrolase, at 2,146,486 to 2,147,145
_RS10095
ABZR87_RS10100: ABZR87_RS10100 - Rieske (2Fe-2S) protein, at 2,147,138 to 2,147,539
_RS10100
ABZR87_RS10105: ABZR87_RS10105 - S49 family peptidase, at 2,147,576 to 2,148,688
_RS10105
Position (kb)
2147
2148 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2146.139 kb on - strand, within ABZR87_RS10090 at 2146.181 kb on + strand, within ABZR87_RS10090 at 2146.181 kb on + strand, within ABZR87_RS10090 at 2146.181 kb on + strand, within ABZR87_RS10090 at 2146.181 kb on + strand, within ABZR87_RS10090 at 2146.182 kb on - strand, within ABZR87_RS10090 at 2146.203 kb on + strand, within ABZR87_RS10090 at 2146.204 kb on - strand, within ABZR87_RS10090 at 2146.299 kb on + strand, within ABZR87_RS10090 at 2146.300 kb on - strand, within ABZR87_RS10090 at 2146.300 kb on - strand, within ABZR87_RS10090 at 2146.301 kb on - strand, within ABZR87_RS10090 at 2146.460 kb on + strand at 2146.660 kb on + strand, within ABZR87_RS10095 at 2146.660 kb on + strand, within ABZR87_RS10095 at 2146.661 kb on - strand, within ABZR87_RS10095 at 2146.661 kb on - strand, within ABZR87_RS10095 at 2146.661 kb on - strand, within ABZR87_RS10095 at 2146.712 kb on - strand, within ABZR87_RS10095 at 2146.723 kb on + strand, within ABZR87_RS10095 at 2146.724 kb on - strand, within ABZR87_RS10095 at 2146.724 kb on - strand, within ABZR87_RS10095 at 2146.724 kb on - strand, within ABZR87_RS10095 at 2146.798 kb on + strand, within ABZR87_RS10095 at 2146.798 kb on + strand, within ABZR87_RS10095 at 2146.799 kb on - strand, within ABZR87_RS10095 at 2146.799 kb on - strand, within ABZR87_RS10095 at 2146.940 kb on + strand, within ABZR87_RS10095 at 2146.941 kb on - strand, within ABZR87_RS10095 at 2147.047 kb on + strand, within ABZR87_RS10095 at 2147.047 kb on + strand, within ABZR87_RS10095 at 2147.047 kb on + strand, within ABZR87_RS10095 at 2147.047 kb on + strand, within ABZR87_RS10095 at 2147.047 kb on + strand, within ABZR87_RS10095 at 2147.047 kb on + strand, within ABZR87_RS10095 at 2147.048 kb on - strand, within ABZR87_RS10095 at 2147.048 kb on - strand, within ABZR87_RS10095 at 2147.048 kb on - strand, within ABZR87_RS10095 at 2147.048 kb on - strand, within ABZR87_RS10095 at 2147.092 kb on + strand at 2147.166 kb on + strand at 2147.166 kb on + strand at 2147.166 kb on + strand at 2147.166 kb on + strand at 2147.166 kb on + strand at 2147.166 kb on + strand at 2147.166 kb on + strand at 2147.167 kb on - strand at 2147.167 kb on - strand at 2147.167 kb on - strand at 2147.259 kb on - strand, within ABZR87_RS10100 at 2147.280 kb on - strand, within ABZR87_RS10100 at 2147.354 kb on + strand, within ABZR87_RS10100 at 2147.354 kb on + strand, within ABZR87_RS10100 at 2147.355 kb on - strand, within ABZR87_RS10100 at 2147.355 kb on - strand, within ABZR87_RS10100 at 2147.355 kb on - strand, within ABZR87_RS10100 at 2147.384 kb on + strand, within ABZR87_RS10100 at 2147.436 kb on + strand, within ABZR87_RS10100 at 2147.436 kb on + strand, within ABZR87_RS10100 at 2147.437 kb on - strand, within ABZR87_RS10100 at 2147.437 kb on - strand, within ABZR87_RS10100 at 2147.493 kb on + strand, within ABZR87_RS10100 at 2147.494 kb on - strand, within ABZR87_RS10100 at 2147.494 kb on - strand, within ABZR87_RS10100 at 2147.537 kb on + strand at 2147.538 kb on - strand at 2147.575 kb on + strand at 2147.575 kb on + strand at 2147.576 kb on - strand at 2147.576 kb on - strand at 2147.576 kb on - strand at 2147.646 kb on + strand at 2147.781 kb on + strand, within ABZR87_RS10105 at 2147.782 kb on - strand, within ABZR87_RS10105 at 2147.869 kb on + strand, within ABZR87_RS10105 at 2147.869 kb on + strand, within ABZR87_RS10105 at 2147.869 kb on + strand, within ABZR87_RS10105 at 2147.869 kb on + strand, within ABZR87_RS10105 at 2147.869 kb on + strand, within ABZR87_RS10105 at 2147.869 kb on + strand, within ABZR87_RS10105 at 2147.870 kb on - strand, within ABZR87_RS10105 at 2147.870 kb on - strand, within ABZR87_RS10105 at 2147.870 kb on - strand, within ABZR87_RS10105 at 2147.873 kb on + strand, within ABZR87_RS10105 at 2147.873 kb on + strand, within ABZR87_RS10105 at 2147.874 kb on - strand, within ABZR87_RS10105 at 2147.874 kb on - strand, within ABZR87_RS10105 at 2147.874 kb on - strand, within ABZR87_RS10105 at 2147.874 kb on - strand, within ABZR87_RS10105 at 2148.113 kb on + strand, within ABZR87_RS10105 at 2148.113 kb on + strand, within ABZR87_RS10105 at 2148.113 kb on + strand, within ABZR87_RS10105 at 2148.114 kb on - strand, within ABZR87_RS10105 at 2148.114 kb on - strand, within ABZR87_RS10105 at 2148.131 kb on + strand, within ABZR87_RS10105 at 2148.131 kb on + strand, within ABZR87_RS10105 at 2148.132 kb on - strand, within ABZR87_RS10105 at 2148.132 kb on - strand, within ABZR87_RS10105 at 2148.132 kb on - strand, within ABZR87_RS10105 at 2148.132 kb on - strand, within ABZR87_RS10105 at 2148.167 kb on + strand, within ABZR87_RS10105 at 2148.168 kb on - strand, within ABZR87_RS10105 at 2148.168 kb on - strand, within ABZR87_RS10105 at 2148.170 kb on + strand, within ABZR87_RS10105 at 2148.170 kb on + strand, within ABZR87_RS10105 at 2148.170 kb on + strand, within ABZR87_RS10105 at 2148.170 kb on + strand, within ABZR87_RS10105 at 2148.170 kb on + strand, within ABZR87_RS10105 at 2148.170 kb on + strand, within ABZR87_RS10105 at 2148.170 kb on + strand, within ABZR87_RS10105 at 2148.170 kb on + strand, within ABZR87_RS10105 at 2148.170 kb on + strand, within ABZR87_RS10105 at 2148.171 kb on - strand, within ABZR87_RS10105 at 2148.171 kb on - strand, within ABZR87_RS10105 at 2148.171 kb on - strand, within ABZR87_RS10105 at 2148.171 kb on - strand, within ABZR87_RS10105 at 2148.171 kb on - strand, within ABZR87_RS10105 at 2148.197 kb on + strand, within ABZR87_RS10105 at 2148.197 kb on + strand, within ABZR87_RS10105 at 2148.197 kb on + strand, within ABZR87_RS10105 at 2148.198 kb on - strand, within ABZR87_RS10105 at 2148.198 kb on - strand, within ABZR87_RS10105 at 2148.257 kb on - strand, within ABZR87_RS10105 at 2148.362 kb on + strand, within ABZR87_RS10105
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 2,146,139 - ABZR87_RS10090 0.65 -2.1 2,146,181 + ABZR87_RS10090 0.69 -0.1 2,146,181 + ABZR87_RS10090 0.69 -0.2 2,146,181 + ABZR87_RS10090 0.69 -1.2 2,146,181 + ABZR87_RS10090 0.69 -0.1 2,146,182 - ABZR87_RS10090 0.69 -1.3 2,146,203 + ABZR87_RS10090 0.71 +0.7 2,146,204 - ABZR87_RS10090 0.71 +0.6 2,146,299 + ABZR87_RS10090 0.80 +0.4 2,146,300 - ABZR87_RS10090 0.80 +0.1 2,146,300 - ABZR87_RS10090 0.80 -1.5 2,146,301 - ABZR87_RS10090 0.80 -1.6 2,146,460 + +0.2 2,146,660 + ABZR87_RS10095 0.26 -1.1 2,146,660 + ABZR87_RS10095 0.26 +0.4 2,146,661 - ABZR87_RS10095 0.27 -1.0 2,146,661 - ABZR87_RS10095 0.27 +0.9 2,146,661 - ABZR87_RS10095 0.27 -0.9 2,146,712 - ABZR87_RS10095 0.34 -0.2 2,146,723 + ABZR87_RS10095 0.36 -0.4 2,146,724 - ABZR87_RS10095 0.36 +2.7 2,146,724 - ABZR87_RS10095 0.36 -0.9 2,146,724 - ABZR87_RS10095 0.36 +0.8 2,146,798 + ABZR87_RS10095 0.47 +0.1 2,146,798 + ABZR87_RS10095 0.47 -1.7 2,146,799 - ABZR87_RS10095 0.47 +0.2 2,146,799 - ABZR87_RS10095 0.47 +1.7 2,146,940 + ABZR87_RS10095 0.69 +1.7 2,146,941 - ABZR87_RS10095 0.69 -0.0 2,147,047 + ABZR87_RS10095 0.85 -0.9 2,147,047 + ABZR87_RS10095 0.85 -0.6 2,147,047 + ABZR87_RS10095 0.85 -0.3 2,147,047 + ABZR87_RS10095 0.85 +0.0 2,147,047 + ABZR87_RS10095 0.85 -1.2 2,147,047 + ABZR87_RS10095 0.85 +1.0 2,147,048 - ABZR87_RS10095 0.85 +0.6 2,147,048 - ABZR87_RS10095 0.85 -2.8 2,147,048 - ABZR87_RS10095 0.85 -0.1 2,147,048 - ABZR87_RS10095 0.85 -1.1 2,147,092 + -1.1 2,147,166 + -0.4 2,147,166 + +0.2 2,147,166 + +0.7 2,147,166 + +0.2 2,147,166 + +0.5 2,147,166 + +0.6 2,147,166 + +0.0 2,147,167 - +3.7 2,147,167 - +0.6 2,147,167 - -0.3 2,147,259 - ABZR87_RS10100 0.30 +0.8 2,147,280 - ABZR87_RS10100 0.35 +0.1 2,147,354 + ABZR87_RS10100 0.54 +0.6 2,147,354 + ABZR87_RS10100 0.54 -0.1 2,147,355 - ABZR87_RS10100 0.54 +1.4 2,147,355 - ABZR87_RS10100 0.54 -0.8 2,147,355 - ABZR87_RS10100 0.54 +1.1 2,147,384 + ABZR87_RS10100 0.61 -1.2 2,147,436 + ABZR87_RS10100 0.74 +0.6 2,147,436 + ABZR87_RS10100 0.74 +0.7 2,147,437 - ABZR87_RS10100 0.74 -1.4 2,147,437 - ABZR87_RS10100 0.74 +0.5 2,147,493 + ABZR87_RS10100 0.88 +0.6 2,147,494 - ABZR87_RS10100 0.89 +0.2 2,147,494 - ABZR87_RS10100 0.89 +0.2 2,147,537 + +0.2 2,147,538 - +0.1 2,147,575 + +1.7 2,147,575 + -0.7 2,147,576 - -1.0 2,147,576 - +0.2 2,147,576 - +0.2 2,147,646 + -1.0 2,147,781 + ABZR87_RS10105 0.18 -0.2 2,147,782 - ABZR87_RS10105 0.19 -0.3 2,147,869 + ABZR87_RS10105 0.26 -0.2 2,147,869 + ABZR87_RS10105 0.26 +0.8 2,147,869 + ABZR87_RS10105 0.26 -1.4 2,147,869 + ABZR87_RS10105 0.26 +0.7 2,147,869 + ABZR87_RS10105 0.26 -1.2 2,147,869 + ABZR87_RS10105 0.26 +1.1 2,147,870 - ABZR87_RS10105 0.26 -0.6 2,147,870 - ABZR87_RS10105 0.26 -0.3 2,147,870 - ABZR87_RS10105 0.26 -0.8 2,147,873 + ABZR87_RS10105 0.27 -1.9 2,147,873 + ABZR87_RS10105 0.27 -0.6 2,147,874 - ABZR87_RS10105 0.27 -0.1 2,147,874 - ABZR87_RS10105 0.27 -0.3 2,147,874 - ABZR87_RS10105 0.27 -1.4 2,147,874 - ABZR87_RS10105 0.27 +1.7 2,148,113 + ABZR87_RS10105 0.48 +0.4 2,148,113 + ABZR87_RS10105 0.48 +0.0 2,148,113 + ABZR87_RS10105 0.48 +0.6 2,148,114 - ABZR87_RS10105 0.48 -0.8 2,148,114 - ABZR87_RS10105 0.48 -0.4 2,148,131 + ABZR87_RS10105 0.50 -0.5 2,148,131 + ABZR87_RS10105 0.50 +0.7 2,148,132 - ABZR87_RS10105 0.50 -0.3 2,148,132 - ABZR87_RS10105 0.50 +1.2 2,148,132 - ABZR87_RS10105 0.50 -1.5 2,148,132 - ABZR87_RS10105 0.50 +0.1 2,148,167 + ABZR87_RS10105 0.53 -0.6 2,148,168 - ABZR87_RS10105 0.53 +0.1 2,148,168 - ABZR87_RS10105 0.53 +0.4 2,148,170 + ABZR87_RS10105 0.53 +2.7 2,148,170 + ABZR87_RS10105 0.53 +0.3 2,148,170 + ABZR87_RS10105 0.53 +1.3 2,148,170 + ABZR87_RS10105 0.53 +1.0 2,148,170 + ABZR87_RS10105 0.53 +3.8 2,148,170 + ABZR87_RS10105 0.53 -1.5 2,148,170 + ABZR87_RS10105 0.53 -0.6 2,148,170 + ABZR87_RS10105 0.53 +2.1 2,148,170 + ABZR87_RS10105 0.53 +0.2 2,148,171 - ABZR87_RS10105 0.53 +0.6 2,148,171 - ABZR87_RS10105 0.53 +0.2 2,148,171 - ABZR87_RS10105 0.53 +2.5 2,148,171 - ABZR87_RS10105 0.53 -1.4 2,148,171 - ABZR87_RS10105 0.53 -0.8 2,148,197 + ABZR87_RS10105 0.56 -0.5 2,148,197 + ABZR87_RS10105 0.56 -0.6 2,148,197 + ABZR87_RS10105 0.56 +0.2 2,148,198 - ABZR87_RS10105 0.56 +0.8 2,148,198 - ABZR87_RS10105 0.56 +0.8 2,148,257 - ABZR87_RS10105 0.61 -0.4 2,148,362 + ABZR87_RS10105 0.71 -0.6
Or see this region's nucleotide sequence