Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS10040 and ABZR87_RS10045 are separated by 89 nucleotides ABZR87_RS10045 and ABZR87_RS10050 are separated by 135 nucleotides ABZR87_RS10050 and ABZR87_RS10055 are separated by 19 nucleotides
ABZR87_RS10040: ABZR87_RS10040 - nicotinate phosphoribosyltransferase, at 2,131,881 to 2,133,050
_RS10040
ABZR87_RS10045: ABZR87_RS10045 - lactate utilization protein C, at 2,133,140 to 2,133,859
_RS10045
ABZR87_RS10050: ABZR87_RS10050 - sodium:proton antiporter, at 2,133,995 to 2,135,404
_RS10050
ABZR87_RS10055: ABZR87_RS10055 - D-glycerate dehydrogenase, at 2,135,424 to 2,136,425
_RS10055
Position (kb)
2133
2134
2135
2136 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2133.012 kb on + strand at 2133.021 kb on + strand at 2133.021 kb on + strand at 2133.022 kb on - strand at 2133.022 kb on - strand at 2133.049 kb on - strand at 2133.049 kb on - strand at 2133.070 kb on - strand at 2133.115 kb on - strand at 2133.276 kb on - strand, within ABZR87_RS10045 at 2133.417 kb on - strand, within ABZR87_RS10045 at 2133.906 kb on - strand at 2133.906 kb on - strand at 2133.906 kb on - strand at 2133.906 kb on - strand at 2133.930 kb on + strand at 2135.423 kb on + strand at 2135.423 kb on + strand at 2135.424 kb on - strand at 2135.636 kb on - strand, within ABZR87_RS10055 at 2135.829 kb on + strand, within ABZR87_RS10055 at 2135.829 kb on + strand, within ABZR87_RS10055 at 2135.856 kb on + strand, within ABZR87_RS10055 at 2135.856 kb on + strand, within ABZR87_RS10055 at 2135.856 kb on + strand, within ABZR87_RS10055 at 2135.856 kb on + strand, within ABZR87_RS10055 at 2135.856 kb on + strand, within ABZR87_RS10055 at 2135.857 kb on - strand, within ABZR87_RS10055 at 2135.857 kb on - strand, within ABZR87_RS10055 at 2135.943 kb on + strand, within ABZR87_RS10055 at 2135.944 kb on - strand, within ABZR87_RS10055 at 2135.997 kb on + strand, within ABZR87_RS10055 at 2135.997 kb on + strand, within ABZR87_RS10055 at 2135.997 kb on + strand, within ABZR87_RS10055 at 2135.997 kb on + strand, within ABZR87_RS10055 at 2135.998 kb on - strand, within ABZR87_RS10055 at 2135.998 kb on - strand, within ABZR87_RS10055 at 2135.998 kb on - strand, within ABZR87_RS10055 at 2136.213 kb on + strand, within ABZR87_RS10055 at 2136.214 kb on - strand, within ABZR87_RS10055 at 2136.214 kb on - strand, within ABZR87_RS10055
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 2,133,012 + -0.1 2,133,021 + -0.8 2,133,021 + +2.4 2,133,022 - +0.1 2,133,022 - -1.0 2,133,049 - -0.8 2,133,049 - +0.5 2,133,070 - +0.3 2,133,115 - -0.0 2,133,276 - ABZR87_RS10045 0.19 -0.4 2,133,417 - ABZR87_RS10045 0.38 -3.1 2,133,906 - -1.8 2,133,906 - +0.2 2,133,906 - -1.5 2,133,906 - +0.1 2,133,930 + +0.4 2,135,423 + -0.6 2,135,423 + +0.6 2,135,424 - -0.8 2,135,636 - ABZR87_RS10055 0.21 -0.7 2,135,829 + ABZR87_RS10055 0.40 -0.0 2,135,829 + ABZR87_RS10055 0.40 -0.4 2,135,856 + ABZR87_RS10055 0.43 +0.8 2,135,856 + ABZR87_RS10055 0.43 -1.0 2,135,856 + ABZR87_RS10055 0.43 -1.5 2,135,856 + ABZR87_RS10055 0.43 -0.4 2,135,856 + ABZR87_RS10055 0.43 -0.2 2,135,857 - ABZR87_RS10055 0.43 -0.1 2,135,857 - ABZR87_RS10055 0.43 +1.1 2,135,943 + ABZR87_RS10055 0.52 +0.4 2,135,944 - ABZR87_RS10055 0.52 -1.4 2,135,997 + ABZR87_RS10055 0.57 +1.0 2,135,997 + ABZR87_RS10055 0.57 -0.8 2,135,997 + ABZR87_RS10055 0.57 +0.7 2,135,997 + ABZR87_RS10055 0.57 -2.1 2,135,998 - ABZR87_RS10055 0.57 -0.3 2,135,998 - ABZR87_RS10055 0.57 -0.5 2,135,998 - ABZR87_RS10055 0.57 -0.7 2,136,213 + ABZR87_RS10055 0.79 -0.0 2,136,214 - ABZR87_RS10055 0.79 -2.2 2,136,214 - ABZR87_RS10055 0.79 +0.4
Or see this region's nucleotide sequence