Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS10025 and ABZR87_RS10030 are separated by 24 nucleotides ABZR87_RS10030 and ABZR87_RS10035 are separated by 25 nucleotides ABZR87_RS10035 and ABZR87_RS10040 are separated by 181 nucleotides
ABZR87_RS10025: ABZR87_RS10025 - lysine--tRNA ligase, at 2,128,260 to 2,129,804
_RS10025
ABZR87_RS10030: ABZR87_RS10030 - SDR family oxidoreductase, at 2,129,829 to 2,130,569
_RS10030
ABZR87_RS10035: ABZR87_RS10035 - peptide chain release factor 2, at 2,130,595 to 2,131,699
_RS10035
ABZR87_RS10040: ABZR87_RS10040 - nicotinate phosphoribosyltransferase, at 2,131,881 to 2,133,050
_RS10040
Position (kb)
2130
2131
2132 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2129.888 kb on - strand at 2130.107 kb on - strand, within ABZR87_RS10030 at 2130.107 kb on - strand, within ABZR87_RS10030 at 2131.762 kb on - strand at 2131.914 kb on + strand at 2131.915 kb on - strand at 2131.915 kb on - strand at 2132.082 kb on + strand, within ABZR87_RS10040 at 2132.082 kb on + strand, within ABZR87_RS10040 at 2132.083 kb on - strand, within ABZR87_RS10040 at 2132.155 kb on - strand, within ABZR87_RS10040 at 2132.155 kb on - strand, within ABZR87_RS10040 at 2132.155 kb on - strand, within ABZR87_RS10040 at 2132.460 kb on + strand, within ABZR87_RS10040 at 2132.461 kb on - strand, within ABZR87_RS10040 at 2132.532 kb on + strand, within ABZR87_RS10040 at 2132.532 kb on + strand, within ABZR87_RS10040 at 2132.533 kb on - strand, within ABZR87_RS10040 at 2132.533 kb on - strand, within ABZR87_RS10040 at 2132.533 kb on - strand, within ABZR87_RS10040 at 2132.611 kb on - strand, within ABZR87_RS10040 at 2132.611 kb on - strand, within ABZR87_RS10040 at 2132.642 kb on + strand, within ABZR87_RS10040 at 2132.643 kb on - strand, within ABZR87_RS10040 at 2132.646 kb on + strand, within ABZR87_RS10040 at 2132.646 kb on + strand, within ABZR87_RS10040 at 2132.646 kb on + strand, within ABZR87_RS10040 at 2132.647 kb on - strand, within ABZR87_RS10040
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 2,129,888 - -1.3 2,130,107 - ABZR87_RS10030 0.38 +0.1 2,130,107 - ABZR87_RS10030 0.38 -0.1 2,131,762 - -1.0 2,131,914 + +0.7 2,131,915 - +1.0 2,131,915 - -0.6 2,132,082 + ABZR87_RS10040 0.17 +0.3 2,132,082 + ABZR87_RS10040 0.17 -0.3 2,132,083 - ABZR87_RS10040 0.17 -0.0 2,132,155 - ABZR87_RS10040 0.23 +0.5 2,132,155 - ABZR87_RS10040 0.23 +1.9 2,132,155 - ABZR87_RS10040 0.23 -0.4 2,132,460 + ABZR87_RS10040 0.49 +0.4 2,132,461 - ABZR87_RS10040 0.50 -2.7 2,132,532 + ABZR87_RS10040 0.56 -2.5 2,132,532 + ABZR87_RS10040 0.56 -2.0 2,132,533 - ABZR87_RS10040 0.56 -1.1 2,132,533 - ABZR87_RS10040 0.56 +1.7 2,132,533 - ABZR87_RS10040 0.56 +0.4 2,132,611 - ABZR87_RS10040 0.62 -0.4 2,132,611 - ABZR87_RS10040 0.62 +1.7 2,132,642 + ABZR87_RS10040 0.65 -0.3 2,132,643 - ABZR87_RS10040 0.65 -2.5 2,132,646 + ABZR87_RS10040 0.65 +0.6 2,132,646 + ABZR87_RS10040 0.65 -1.6 2,132,646 + ABZR87_RS10040 0.65 +0.7 2,132,647 - ABZR87_RS10040 0.65 +0.2
Or see this region's nucleotide sequence