Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10015

Experiment: Ra1_0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS10005 and ABZR87_RS10010 are separated by 52 nucleotidesABZR87_RS10010 and ABZR87_RS10015 are separated by 31 nucleotidesABZR87_RS10015 and ABZR87_RS10020 are separated by 82 nucleotides ABZR87_RS10005: ABZR87_RS10005 - Fe-S protein assembly chaperone HscA, at 2,124,683 to 2,126,548 _RS10005 ABZR87_RS10010: ABZR87_RS10010 - ISC system 2Fe-2S type ferredoxin, at 2,126,601 to 2,126,939 _RS10010 ABZR87_RS10015: ABZR87_RS10015 - Fe-S cluster assembly protein IscX, at 2,126,971 to 2,127,165 _RS10015 ABZR87_RS10020: ABZR87_RS10020 - glycine zipper 2TM domain-containing protein, at 2,127,248 to 2,127,991 _RS10020 Position (kb) 2126 2127 2128Strain fitness (log2 ratio) -2 -1 0 1at 2126.530 kb on + strandat 2126.583 kb on + strandat 2126.583 kb on + strandat 2127.011 kb on - strand, within ABZR87_RS10015at 2127.019 kb on + strand, within ABZR87_RS10015at 2127.019 kb on + strand, within ABZR87_RS10015at 2127.020 kb on - strand, within ABZR87_RS10015at 2127.020 kb on - strand, within ABZR87_RS10015at 2127.164 kb on - strandat 2127.171 kb on + strandat 2127.171 kb on + strandat 2127.171 kb on + strandat 2127.318 kb on + strandat 2127.319 kb on - strandat 2127.337 kb on + strand, within ABZR87_RS10020at 2127.338 kb on - strand, within ABZR87_RS10020at 2127.388 kb on - strand, within ABZR87_RS10020at 2127.388 kb on - strand, within ABZR87_RS10020at 2127.388 kb on - strand, within ABZR87_RS10020at 2127.423 kb on - strand, within ABZR87_RS10020at 2127.448 kb on + strand, within ABZR87_RS10020at 2127.609 kb on + strand, within ABZR87_RS10020at 2127.642 kb on + strand, within ABZR87_RS10020at 2127.642 kb on + strand, within ABZR87_RS10020at 2127.954 kb on + strandat 2127.954 kb on + strandat 2127.955 kb on - strandat 2127.955 kb on - strandat 2128.144 kb on + strandat 2128.144 kb on + strandat 2128.145 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra1_0.1
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2,126,530 + +1.0
2,126,583 + +0.4
2,126,583 + +0.4
2,127,011 - ABZR87_RS10015 0.21 +0.1
2,127,019 + ABZR87_RS10015 0.25 -1.6
2,127,019 + ABZR87_RS10015 0.25 -0.6
2,127,020 - ABZR87_RS10015 0.25 -1.3
2,127,020 - ABZR87_RS10015 0.25 +0.1
2,127,164 - +0.4
2,127,171 + -0.9
2,127,171 + +1.4
2,127,171 + -0.2
2,127,318 + +0.1
2,127,319 - -2.7
2,127,337 + ABZR87_RS10020 0.12 +1.5
2,127,338 - ABZR87_RS10020 0.12 -0.6
2,127,388 - ABZR87_RS10020 0.19 +0.7
2,127,388 - ABZR87_RS10020 0.19 -1.7
2,127,388 - ABZR87_RS10020 0.19 -0.6
2,127,423 - ABZR87_RS10020 0.24 +0.2
2,127,448 + ABZR87_RS10020 0.27 +1.0
2,127,609 + ABZR87_RS10020 0.49 +0.7
2,127,642 + ABZR87_RS10020 0.53 +0.4
2,127,642 + ABZR87_RS10020 0.53 +0.5
2,127,954 + +0.8
2,127,954 + -0.7
2,127,955 - -0.8
2,127,955 - +0.0
2,128,144 + -0.3
2,128,144 + -0.2
2,128,145 - -0.5

Or see this region's nucleotide sequence