Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS09545 and ABZR87_RS09550 are separated by 65 nucleotides ABZR87_RS09550 and ABZR87_RS09555 are separated by 168 nucleotides
ABZR87_RS09545: ABZR87_RS09545 - electron transfer flavoprotein subunit beta/FixA family protein, at 2,026,588 to 2,027,337
_RS09545
ABZR87_RS09550: ABZR87_RS09550 - FAD-binding protein, at 2,027,403 to 2,028,338
_RS09550
ABZR87_RS09555: ABZR87_RS09555 - acyl-CoA dehydrogenase, at 2,028,507 to 2,030,291
_RS09555
Position (kb)
2027
2028
2029 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2026.426 kb on + strand at 2026.436 kb on + strand at 2026.436 kb on + strand at 2026.437 kb on - strand at 2026.437 kb on - strand at 2026.437 kb on - strand at 2026.437 kb on - strand at 2026.437 kb on - strand at 2026.437 kb on - strand at 2026.437 kb on - strand at 2026.437 kb on - strand at 2026.437 kb on - strand at 2026.437 kb on - strand at 2026.536 kb on + strand at 2026.536 kb on + strand at 2026.537 kb on - strand at 2026.537 kb on - strand at 2026.537 kb on - strand at 2026.537 kb on - strand at 2026.537 kb on - strand at 2026.537 kb on - strand at 2026.538 kb on + strand at 2026.538 kb on + strand at 2026.538 kb on + strand at 2026.538 kb on + strand at 2026.538 kb on + strand at 2026.566 kb on + strand at 2027.335 kb on + strand at 2027.350 kb on + strand at 2027.350 kb on + strand at 2028.363 kb on + strand at 2028.423 kb on + strand at 2028.423 kb on + strand at 2028.423 kb on + strand at 2028.426 kb on - strand at 2028.513 kb on + strand at 2028.513 kb on + strand at 2028.513 kb on + strand at 2028.513 kb on + strand at 2028.513 kb on + strand at 2028.513 kb on + strand at 2028.513 kb on + strand at 2028.513 kb on + strand at 2028.513 kb on + strand at 2028.513 kb on + strand at 2028.514 kb on - strand at 2028.514 kb on - strand at 2028.514 kb on - strand at 2028.798 kb on + strand, within ABZR87_RS09555
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 2,026,426 + -0.2 2,026,436 + -1.1 2,026,436 + -0.8 2,026,437 - -1.8 2,026,437 - +0.3 2,026,437 - -0.3 2,026,437 - -1.0 2,026,437 - +1.4 2,026,437 - +0.9 2,026,437 - -0.4 2,026,437 - -1.8 2,026,437 - -1.2 2,026,437 - +1.1 2,026,536 + +0.2 2,026,536 + -1.0 2,026,537 - +0.2 2,026,537 - +0.4 2,026,537 - +0.9 2,026,537 - -0.9 2,026,537 - -0.9 2,026,537 - +0.5 2,026,538 + -0.2 2,026,538 + -0.7 2,026,538 + -1.0 2,026,538 + +0.6 2,026,538 + -0.5 2,026,566 + +2.7 2,027,335 + -0.2 2,027,350 + -0.5 2,027,350 + +0.5 2,028,363 + -0.5 2,028,423 + +0.4 2,028,423 + +0.8 2,028,423 + -0.6 2,028,426 - +0.2 2,028,513 + +0.5 2,028,513 + -0.0 2,028,513 + -0.1 2,028,513 + +0.3 2,028,513 + -0.7 2,028,513 + +0.1 2,028,513 + +0.3 2,028,513 + +0.4 2,028,513 + -0.2 2,028,513 + -0.1 2,028,514 - +0.1 2,028,514 - -0.4 2,028,514 - +0.3 2,028,798 + ABZR87_RS09555 0.16 +2.7
Or see this region's nucleotide sequence