Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09550

Experiment: Ra1_0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS09545 and ABZR87_RS09550 are separated by 65 nucleotidesABZR87_RS09550 and ABZR87_RS09555 are separated by 168 nucleotides ABZR87_RS09545: ABZR87_RS09545 - electron transfer flavoprotein subunit beta/FixA family protein, at 2,026,588 to 2,027,337 _RS09545 ABZR87_RS09550: ABZR87_RS09550 - FAD-binding protein, at 2,027,403 to 2,028,338 _RS09550 ABZR87_RS09555: ABZR87_RS09555 - acyl-CoA dehydrogenase, at 2,028,507 to 2,030,291 _RS09555 Position (kb) 2027 2028 2029Strain fitness (log2 ratio) -2 -1 0 1 2at 2026.426 kb on + strandat 2026.436 kb on + strandat 2026.436 kb on + strandat 2026.437 kb on - strandat 2026.437 kb on - strandat 2026.437 kb on - strandat 2026.437 kb on - strandat 2026.437 kb on - strandat 2026.437 kb on - strandat 2026.437 kb on - strandat 2026.437 kb on - strandat 2026.437 kb on - strandat 2026.437 kb on - strandat 2026.536 kb on + strandat 2026.536 kb on + strandat 2026.537 kb on - strandat 2026.537 kb on - strandat 2026.537 kb on - strandat 2026.537 kb on - strandat 2026.537 kb on - strandat 2026.537 kb on - strandat 2026.538 kb on + strandat 2026.538 kb on + strandat 2026.538 kb on + strandat 2026.538 kb on + strandat 2026.538 kb on + strandat 2026.566 kb on + strandat 2027.335 kb on + strandat 2027.350 kb on + strandat 2027.350 kb on + strandat 2028.363 kb on + strandat 2028.423 kb on + strandat 2028.423 kb on + strandat 2028.423 kb on + strandat 2028.426 kb on - strandat 2028.513 kb on + strandat 2028.513 kb on + strandat 2028.513 kb on + strandat 2028.513 kb on + strandat 2028.513 kb on + strandat 2028.513 kb on + strandat 2028.513 kb on + strandat 2028.513 kb on + strandat 2028.513 kb on + strandat 2028.513 kb on + strandat 2028.514 kb on - strandat 2028.514 kb on - strandat 2028.514 kb on - strandat 2028.798 kb on + strand, within ABZR87_RS09555

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra1_0.1
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2,026,426 + -0.2
2,026,436 + -1.1
2,026,436 + -0.8
2,026,437 - -1.8
2,026,437 - +0.3
2,026,437 - -0.3
2,026,437 - -1.0
2,026,437 - +1.4
2,026,437 - +0.9
2,026,437 - -0.4
2,026,437 - -1.8
2,026,437 - -1.2
2,026,437 - +1.1
2,026,536 + +0.2
2,026,536 + -1.0
2,026,537 - +0.2
2,026,537 - +0.4
2,026,537 - +0.9
2,026,537 - -0.9
2,026,537 - -0.9
2,026,537 - +0.5
2,026,538 + -0.2
2,026,538 + -0.7
2,026,538 + -1.0
2,026,538 + +0.6
2,026,538 + -0.5
2,026,566 + +2.7
2,027,335 + -0.2
2,027,350 + -0.5
2,027,350 + +0.5
2,028,363 + -0.5
2,028,423 + +0.4
2,028,423 + +0.8
2,028,423 + -0.6
2,028,426 - +0.2
2,028,513 + +0.5
2,028,513 + -0.0
2,028,513 + -0.1
2,028,513 + +0.3
2,028,513 + -0.7
2,028,513 + +0.1
2,028,513 + +0.3
2,028,513 + +0.4
2,028,513 + -0.2
2,028,513 + -0.1
2,028,514 - +0.1
2,028,514 - -0.4
2,028,514 - +0.3
2,028,798 + ABZR87_RS09555 0.16 +2.7

Or see this region's nucleotide sequence