Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS09525 and ABZR87_RS09530 are separated by 166 nucleotides ABZR87_RS09530 and ABZR87_RS09535 overlap by 11 nucleotides ABZR87_RS09535 and ABZR87_RS09540 are separated by 33 nucleotides
ABZR87_RS09525: ABZR87_RS09525 - histone deacetylase family protein, at 2,022,782 to 2,023,705
_RS09525
ABZR87_RS09530: ABZR87_RS09530 - methionine ABC transporter ATP-binding protein, at 2,023,872 to 2,024,921
_RS09530
ABZR87_RS09535: ABZR87_RS09535 - methionine ABC transporter permease, at 2,024,911 to 2,025,564
_RS09535
ABZR87_RS09540: ABZR87_RS09540 - MetQ/NlpA family ABC transporter substrate-binding protein, at 2,025,598 to 2,026,398
_RS09540
Position (kb)
2023
2024
2025 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2022.971 kb on + strand, within ABZR87_RS09525 at 2022.971 kb on + strand, within ABZR87_RS09525 at 2022.971 kb on + strand, within ABZR87_RS09525 at 2022.972 kb on - strand, within ABZR87_RS09525 at 2023.011 kb on - strand, within ABZR87_RS09525 at 2023.048 kb on + strand, within ABZR87_RS09525 at 2023.048 kb on + strand, within ABZR87_RS09525 at 2023.048 kb on + strand, within ABZR87_RS09525 at 2023.048 kb on + strand, within ABZR87_RS09525 at 2023.048 kb on + strand, within ABZR87_RS09525 at 2023.048 kb on + strand, within ABZR87_RS09525 at 2023.049 kb on - strand, within ABZR87_RS09525 at 2023.049 kb on - strand, within ABZR87_RS09525 at 2023.049 kb on - strand, within ABZR87_RS09525 at 2023.049 kb on - strand, within ABZR87_RS09525 at 2023.049 kb on - strand, within ABZR87_RS09525 at 2023.049 kb on - strand, within ABZR87_RS09525 at 2023.049 kb on - strand, within ABZR87_RS09525 at 2023.049 kb on - strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.052 kb on + strand, within ABZR87_RS09525 at 2023.053 kb on - strand, within ABZR87_RS09525 at 2023.053 kb on - strand, within ABZR87_RS09525 at 2023.053 kb on - strand, within ABZR87_RS09525 at 2023.053 kb on - strand, within ABZR87_RS09525 at 2023.053 kb on - strand, within ABZR87_RS09525 at 2023.053 kb on - strand, within ABZR87_RS09525 at 2023.053 kb on - strand, within ABZR87_RS09525 at 2023.053 kb on - strand, within ABZR87_RS09525 at 2023.053 kb on - strand, within ABZR87_RS09525 at 2023.053 kb on - strand, within ABZR87_RS09525 at 2023.053 kb on - strand, within ABZR87_RS09525 at 2023.053 kb on - strand, within ABZR87_RS09525 at 2023.053 kb on - strand, within ABZR87_RS09525 at 2023.053 kb on - strand, within ABZR87_RS09525 at 2023.053 kb on - strand, within ABZR87_RS09525 at 2023.053 kb on - strand, within ABZR87_RS09525 at 2023.053 kb on - strand, within ABZR87_RS09525 at 2023.053 kb on - strand, within ABZR87_RS09525 at 2023.232 kb on + strand, within ABZR87_RS09525 at 2023.233 kb on - strand, within ABZR87_RS09525 at 2023.233 kb on - strand, within ABZR87_RS09525 at 2023.303 kb on + strand, within ABZR87_RS09525 at 2023.352 kb on + strand, within ABZR87_RS09525 at 2023.352 kb on + strand, within ABZR87_RS09525 at 2023.352 kb on + strand, within ABZR87_RS09525 at 2023.352 kb on + strand, within ABZR87_RS09525 at 2023.353 kb on - strand, within ABZR87_RS09525 at 2023.353 kb on - strand, within ABZR87_RS09525 at 2023.353 kb on - strand, within ABZR87_RS09525 at 2023.353 kb on - strand, within ABZR87_RS09525 at 2023.358 kb on + strand, within ABZR87_RS09525 at 2023.359 kb on - strand, within ABZR87_RS09525 at 2023.413 kb on - strand, within ABZR87_RS09525 at 2023.413 kb on - strand, within ABZR87_RS09525 at 2023.563 kb on - strand, within ABZR87_RS09525 at 2023.563 kb on - strand, within ABZR87_RS09525 at 2023.563 kb on - strand, within ABZR87_RS09525 at 2023.643 kb on + strand at 2023.643 kb on + strand at 2023.643 kb on + strand at 2023.644 kb on - strand at 2023.644 kb on - strand at 2023.703 kb on + strand at 2023.704 kb on - strand at 2023.750 kb on - strand at 2023.762 kb on - strand at 2023.782 kb on + strand at 2023.782 kb on + strand at 2023.783 kb on - strand at 2023.794 kb on + strand at 2023.794 kb on + strand at 2023.794 kb on + strand at 2023.794 kb on + strand at 2023.794 kb on + strand at 2023.794 kb on + strand at 2023.795 kb on - strand at 2023.795 kb on - strand at 2023.795 kb on - strand at 2023.799 kb on + strand at 2023.800 kb on - strand at 2023.867 kb on + strand at 2023.867 kb on + strand at 2023.867 kb on + strand at 2024.081 kb on + strand, within ABZR87_RS09530 at 2024.081 kb on + strand, within ABZR87_RS09530 at 2024.081 kb on + strand, within ABZR87_RS09530 at 2024.081 kb on + strand, within ABZR87_RS09530 at 2024.082 kb on - strand, within ABZR87_RS09530 at 2024.172 kb on + strand, within ABZR87_RS09530 at 2024.172 kb on + strand, within ABZR87_RS09530 at 2024.172 kb on + strand, within ABZR87_RS09530 at 2024.754 kb on + strand, within ABZR87_RS09530 at 2024.754 kb on + strand, within ABZR87_RS09530 at 2024.755 kb on - strand, within ABZR87_RS09530 at 2024.786 kb on + strand, within ABZR87_RS09530 at 2025.025 kb on + strand, within ABZR87_RS09535 at 2025.026 kb on - strand, within ABZR87_RS09535 at 2025.026 kb on - strand, within ABZR87_RS09535 at 2025.313 kb on + strand, within ABZR87_RS09535 at 2025.313 kb on + strand, within ABZR87_RS09535 at 2025.793 kb on + strand, within ABZR87_RS09540 at 2025.793 kb on + strand, within ABZR87_RS09540 at 2025.793 kb on + strand, within ABZR87_RS09540 at 2025.794 kb on - strand, within ABZR87_RS09540 at 2025.794 kb on - strand, within ABZR87_RS09540 at 2025.844 kb on + strand, within ABZR87_RS09540 at 2025.844 kb on + strand, within ABZR87_RS09540 at 2025.844 kb on + strand, within ABZR87_RS09540 at 2025.844 kb on + strand, within ABZR87_RS09540 at 2025.845 kb on - strand, within ABZR87_RS09540 at 2025.845 kb on - strand, within ABZR87_RS09540 at 2025.845 kb on - strand, within ABZR87_RS09540 at 2025.845 kb on - strand, within ABZR87_RS09540 at 2025.859 kb on + strand, within ABZR87_RS09540
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 2,022,971 + ABZR87_RS09525 0.20 -0.1 2,022,971 + ABZR87_RS09525 0.20 -1.8 2,022,971 + ABZR87_RS09525 0.20 -0.5 2,022,972 - ABZR87_RS09525 0.21 -0.9 2,023,011 - ABZR87_RS09525 0.25 +1.4 2,023,048 + ABZR87_RS09525 0.29 +0.1 2,023,048 + ABZR87_RS09525 0.29 -0.0 2,023,048 + ABZR87_RS09525 0.29 +0.4 2,023,048 + ABZR87_RS09525 0.29 -0.8 2,023,048 + ABZR87_RS09525 0.29 -1.0 2,023,048 + ABZR87_RS09525 0.29 -0.5 2,023,049 - ABZR87_RS09525 0.29 +0.6 2,023,049 - ABZR87_RS09525 0.29 +0.7 2,023,049 - ABZR87_RS09525 0.29 +0.5 2,023,049 - ABZR87_RS09525 0.29 +0.7 2,023,049 - ABZR87_RS09525 0.29 +1.2 2,023,049 - ABZR87_RS09525 0.29 -1.3 2,023,049 - ABZR87_RS09525 0.29 -1.4 2,023,049 - ABZR87_RS09525 0.29 +0.8 2,023,052 + ABZR87_RS09525 0.29 -0.2 2,023,052 + ABZR87_RS09525 0.29 +0.2 2,023,052 + ABZR87_RS09525 0.29 -0.7 2,023,052 + ABZR87_RS09525 0.29 +0.5 2,023,052 + ABZR87_RS09525 0.29 -0.2 2,023,052 + ABZR87_RS09525 0.29 -0.1 2,023,052 + ABZR87_RS09525 0.29 -0.2 2,023,052 + ABZR87_RS09525 0.29 +1.1 2,023,052 + ABZR87_RS09525 0.29 +2.3 2,023,052 + ABZR87_RS09525 0.29 +1.4 2,023,052 + ABZR87_RS09525 0.29 +0.4 2,023,052 + ABZR87_RS09525 0.29 -1.1 2,023,052 + ABZR87_RS09525 0.29 -0.3 2,023,052 + ABZR87_RS09525 0.29 -1.7 2,023,052 + ABZR87_RS09525 0.29 -0.2 2,023,052 + ABZR87_RS09525 0.29 -0.4 2,023,052 + ABZR87_RS09525 0.29 +2.1 2,023,052 + ABZR87_RS09525 0.29 +0.3 2,023,052 + ABZR87_RS09525 0.29 +0.4 2,023,052 + ABZR87_RS09525 0.29 -1.0 2,023,053 - ABZR87_RS09525 0.29 +2.1 2,023,053 - ABZR87_RS09525 0.29 -1.8 2,023,053 - ABZR87_RS09525 0.29 -1.4 2,023,053 - ABZR87_RS09525 0.29 -0.6 2,023,053 - ABZR87_RS09525 0.29 +0.7 2,023,053 - ABZR87_RS09525 0.29 +1.1 2,023,053 - ABZR87_RS09525 0.29 -0.3 2,023,053 - ABZR87_RS09525 0.29 +0.1 2,023,053 - ABZR87_RS09525 0.29 -1.9 2,023,053 - ABZR87_RS09525 0.29 +0.0 2,023,053 - ABZR87_RS09525 0.29 +1.5 2,023,053 - ABZR87_RS09525 0.29 -0.3 2,023,053 - ABZR87_RS09525 0.29 -0.2 2,023,053 - ABZR87_RS09525 0.29 -0.1 2,023,053 - ABZR87_RS09525 0.29 -0.2 2,023,053 - ABZR87_RS09525 0.29 -0.5 2,023,053 - ABZR87_RS09525 0.29 -0.3 2,023,053 - ABZR87_RS09525 0.29 -0.4 2,023,232 + ABZR87_RS09525 0.49 +2.1 2,023,233 - ABZR87_RS09525 0.49 -0.0 2,023,233 - ABZR87_RS09525 0.49 -0.4 2,023,303 + ABZR87_RS09525 0.56 -0.2 2,023,352 + ABZR87_RS09525 0.62 -0.6 2,023,352 + ABZR87_RS09525 0.62 +0.7 2,023,352 + ABZR87_RS09525 0.62 -1.4 2,023,352 + ABZR87_RS09525 0.62 +0.6 2,023,353 - ABZR87_RS09525 0.62 -2.7 2,023,353 - ABZR87_RS09525 0.62 -0.0 2,023,353 - ABZR87_RS09525 0.62 +0.7 2,023,353 - ABZR87_RS09525 0.62 +0.6 2,023,358 + ABZR87_RS09525 0.62 -0.4 2,023,359 - ABZR87_RS09525 0.62 +0.2 2,023,413 - ABZR87_RS09525 0.68 +0.2 2,023,413 - ABZR87_RS09525 0.68 +0.4 2,023,563 - ABZR87_RS09525 0.85 -0.3 2,023,563 - ABZR87_RS09525 0.85 +0.4 2,023,563 - ABZR87_RS09525 0.85 -1.5 2,023,643 + -0.5 2,023,643 + +0.1 2,023,643 + -0.3 2,023,644 - -0.4 2,023,644 - -0.9 2,023,703 + +0.1 2,023,704 - -0.2 2,023,750 - -0.9 2,023,762 - -0.8 2,023,782 + -0.6 2,023,782 + -0.3 2,023,783 - +0.7 2,023,794 + -1.0 2,023,794 + +0.4 2,023,794 + -1.3 2,023,794 + -0.3 2,023,794 + -2.8 2,023,794 + +0.7 2,023,795 - +1.1 2,023,795 - -0.3 2,023,795 - +1.4 2,023,799 + -0.3 2,023,800 - -0.4 2,023,867 + +0.0 2,023,867 + -2.5 2,023,867 + -0.8 2,024,081 + ABZR87_RS09530 0.20 +2.0 2,024,081 + ABZR87_RS09530 0.20 +0.3 2,024,081 + ABZR87_RS09530 0.20 -0.0 2,024,081 + ABZR87_RS09530 0.20 +0.8 2,024,082 - ABZR87_RS09530 0.20 +0.7 2,024,172 + ABZR87_RS09530 0.29 -0.1 2,024,172 + ABZR87_RS09530 0.29 -0.3 2,024,172 + ABZR87_RS09530 0.29 -0.3 2,024,754 + ABZR87_RS09530 0.84 -0.3 2,024,754 + ABZR87_RS09530 0.84 +0.1 2,024,755 - ABZR87_RS09530 0.84 -0.1 2,024,786 + ABZR87_RS09530 0.87 +0.2 2,025,025 + ABZR87_RS09535 0.17 +1.5 2,025,026 - ABZR87_RS09535 0.18 +2.7 2,025,026 - ABZR87_RS09535 0.18 +0.5 2,025,313 + ABZR87_RS09535 0.61 +0.1 2,025,313 + ABZR87_RS09535 0.61 -1.1 2,025,793 + ABZR87_RS09540 0.24 -0.3 2,025,793 + ABZR87_RS09540 0.24 -1.7 2,025,793 + ABZR87_RS09540 0.24 -1.2 2,025,794 - ABZR87_RS09540 0.24 -2.2 2,025,794 - ABZR87_RS09540 0.24 +0.2 2,025,844 + ABZR87_RS09540 0.31 -0.4 2,025,844 + ABZR87_RS09540 0.31 +0.2 2,025,844 + ABZR87_RS09540 0.31 -0.2 2,025,844 + ABZR87_RS09540 0.31 -0.8 2,025,845 - ABZR87_RS09540 0.31 -0.4 2,025,845 - ABZR87_RS09540 0.31 -0.6 2,025,845 - ABZR87_RS09540 0.31 -0.6 2,025,845 - ABZR87_RS09540 0.31 -1.1 2,025,859 + ABZR87_RS09540 0.33 +1.7
Or see this region's nucleotide sequence