Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08665

Experiment: Ra1_0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08655 and ABZR87_RS08660 are separated by 3 nucleotidesABZR87_RS08660 and ABZR87_RS08665 are separated by 33 nucleotidesABZR87_RS08665 and ABZR87_RS08670 overlap by 14 nucleotides ABZR87_RS08655: ABZR87_RS08655 - glucose-1-phosphate thymidylyltransferase RfbA, at 1,839,597 to 1,840,469 _RS08655 ABZR87_RS08660: ABZR87_RS08660 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 1,840,473 to 1,841,021 _RS08660 ABZR87_RS08665: ABZR87_RS08665 - GNAT family N-acetyltransferase, at 1,841,055 to 1,841,792 _RS08665 ABZR87_RS08670: ABZR87_RS08670 - dTDP-4-amino-4,6-dideoxygalactose transaminase, at 1,841,779 to 1,842,900 _RS08670 Position (kb) 1841 1842Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 1840.068 kb on - strand, within ABZR87_RS08655at 1840.068 kb on - strand, within ABZR87_RS08655at 1840.120 kb on - strand, within ABZR87_RS08655at 1840.380 kb on - strand, within ABZR87_RS08655at 1840.382 kb on + strandat 1840.431 kb on + strandat 1840.504 kb on + strandat 1840.505 kb on - strandat 1840.505 kb on - strandat 1840.561 kb on - strand, within ABZR87_RS08660at 1840.581 kb on - strand, within ABZR87_RS08660at 1840.600 kb on + strand, within ABZR87_RS08660at 1840.622 kb on + strand, within ABZR87_RS08660at 1840.623 kb on - strand, within ABZR87_RS08660at 1840.720 kb on + strand, within ABZR87_RS08660at 1840.721 kb on - strand, within ABZR87_RS08660at 1840.721 kb on - strand, within ABZR87_RS08660at 1840.725 kb on - strand, within ABZR87_RS08660at 1840.725 kb on - strand, within ABZR87_RS08660at 1840.725 kb on - strand, within ABZR87_RS08660at 1840.725 kb on - strand, within ABZR87_RS08660at 1840.777 kb on + strand, within ABZR87_RS08660at 1840.840 kb on + strand, within ABZR87_RS08660at 1840.841 kb on - strand, within ABZR87_RS08660at 1840.841 kb on - strand, within ABZR87_RS08660at 1840.864 kb on - strand, within ABZR87_RS08660at 1840.878 kb on + strand, within ABZR87_RS08660at 1840.879 kb on - strand, within ABZR87_RS08660at 1840.879 kb on - strand, within ABZR87_RS08660at 1840.880 kb on - strand, within ABZR87_RS08660at 1840.881 kb on + strand, within ABZR87_RS08660at 1840.881 kb on + strand, within ABZR87_RS08660at 1840.881 kb on + strand, within ABZR87_RS08660at 1840.881 kb on + strand, within ABZR87_RS08660at 1840.881 kb on + strand, within ABZR87_RS08660at 1840.882 kb on - strand, within ABZR87_RS08660at 1840.882 kb on - strand, within ABZR87_RS08660at 1840.904 kb on + strand, within ABZR87_RS08660at 1840.996 kb on + strandat 1840.997 kb on - strandat 1841.019 kb on + strandat 1841.019 kb on + strandat 1841.020 kb on - strandat 1841.044 kb on + strandat 1841.065 kb on - strandat 1841.065 kb on - strandat 1841.068 kb on + strandat 1841.168 kb on + strand, within ABZR87_RS08665at 1841.168 kb on + strand, within ABZR87_RS08665at 1841.169 kb on - strand, within ABZR87_RS08665at 1841.234 kb on + strand, within ABZR87_RS08665at 1841.234 kb on + strand, within ABZR87_RS08665at 1841.235 kb on - strand, within ABZR87_RS08665at 1841.235 kb on - strand, within ABZR87_RS08665at 1841.255 kb on + strand, within ABZR87_RS08665at 1841.255 kb on + strand, within ABZR87_RS08665at 1841.256 kb on - strand, within ABZR87_RS08665at 1841.256 kb on - strand, within ABZR87_RS08665at 1841.256 kb on - strand, within ABZR87_RS08665at 1841.256 kb on - strand, within ABZR87_RS08665at 1841.265 kb on + strand, within ABZR87_RS08665at 1841.265 kb on + strand, within ABZR87_RS08665at 1841.266 kb on - strand, within ABZR87_RS08665at 1841.266 kb on - strand, within ABZR87_RS08665at 1841.266 kb on - strand, within ABZR87_RS08665at 1841.266 kb on - strand, within ABZR87_RS08665at 1841.266 kb on - strand, within ABZR87_RS08665at 1841.266 kb on - strand, within ABZR87_RS08665at 1841.285 kb on - strand, within ABZR87_RS08665at 1841.285 kb on - strand, within ABZR87_RS08665at 1841.285 kb on - strand, within ABZR87_RS08665at 1841.285 kb on - strand, within ABZR87_RS08665at 1841.292 kb on + strand, within ABZR87_RS08665at 1841.389 kb on - strand, within ABZR87_RS08665at 1841.445 kb on + strand, within ABZR87_RS08665at 1841.446 kb on - strand, within ABZR87_RS08665at 1841.617 kb on - strand, within ABZR87_RS08665at 1841.660 kb on + strand, within ABZR87_RS08665at 1841.693 kb on + strand, within ABZR87_RS08665at 1841.705 kb on - strand, within ABZR87_RS08665at 1841.705 kb on - strand, within ABZR87_RS08665at 1841.755 kb on - strandat 1841.793 kb on + strandat 1841.793 kb on + strandat 1841.793 kb on + strandat 1841.793 kb on + strandat 1841.824 kb on + strandat 1841.825 kb on - strandat 1841.855 kb on + strandat 1841.856 kb on - strandat 1841.919 kb on + strand, within ABZR87_RS08670at 1841.981 kb on + strand, within ABZR87_RS08670at 1842.001 kb on - strand, within ABZR87_RS08670at 1842.119 kb on + strand, within ABZR87_RS08670at 1842.161 kb on - strand, within ABZR87_RS08670at 1842.180 kb on + strand, within ABZR87_RS08670at 1842.181 kb on - strand, within ABZR87_RS08670at 1842.184 kb on + strand, within ABZR87_RS08670at 1842.187 kb on - strand, within ABZR87_RS08670at 1842.198 kb on + strand, within ABZR87_RS08670at 1842.257 kb on - strand, within ABZR87_RS08670at 1842.259 kb on + strand, within ABZR87_RS08670at 1842.259 kb on + strand, within ABZR87_RS08670at 1842.259 kb on + strand, within ABZR87_RS08670at 1842.260 kb on - strand, within ABZR87_RS08670at 1842.260 kb on - strand, within ABZR87_RS08670at 1842.260 kb on - strand, within ABZR87_RS08670at 1842.260 kb on - strand, within ABZR87_RS08670at 1842.282 kb on + strand, within ABZR87_RS08670at 1842.282 kb on + strand, within ABZR87_RS08670at 1842.282 kb on + strand, within ABZR87_RS08670at 1842.283 kb on - strand, within ABZR87_RS08670at 1842.283 kb on - strand, within ABZR87_RS08670at 1842.284 kb on + strand, within ABZR87_RS08670at 1842.327 kb on + strand, within ABZR87_RS08670at 1842.327 kb on + strand, within ABZR87_RS08670at 1842.328 kb on - strand, within ABZR87_RS08670at 1842.329 kb on + strand, within ABZR87_RS08670at 1842.329 kb on + strand, within ABZR87_RS08670at 1842.351 kb on + strand, within ABZR87_RS08670at 1842.352 kb on - strand, within ABZR87_RS08670at 1842.445 kb on + strand, within ABZR87_RS08670at 1842.445 kb on + strand, within ABZR87_RS08670at 1842.445 kb on + strand, within ABZR87_RS08670at 1842.445 kb on + strand, within ABZR87_RS08670at 1842.445 kb on + strand, within ABZR87_RS08670at 1842.445 kb on + strand, within ABZR87_RS08670at 1842.445 kb on + strand, within ABZR87_RS08670at 1842.445 kb on + strand, within ABZR87_RS08670at 1842.446 kb on - strand, within ABZR87_RS08670at 1842.446 kb on - strand, within ABZR87_RS08670at 1842.446 kb on - strand, within ABZR87_RS08670at 1842.446 kb on - strand, within ABZR87_RS08670at 1842.446 kb on - strand, within ABZR87_RS08670at 1842.446 kb on - strand, within ABZR87_RS08670at 1842.446 kb on - strand, within ABZR87_RS08670at 1842.446 kb on - strand, within ABZR87_RS08670at 1842.446 kb on - strand, within ABZR87_RS08670at 1842.446 kb on - strand, within ABZR87_RS08670at 1842.446 kb on - strand, within ABZR87_RS08670at 1842.446 kb on - strand, within ABZR87_RS08670at 1842.499 kb on + strand, within ABZR87_RS08670at 1842.499 kb on + strand, within ABZR87_RS08670at 1842.500 kb on - strand, within ABZR87_RS08670at 1842.500 kb on - strand, within ABZR87_RS08670at 1842.552 kb on + strand, within ABZR87_RS08670at 1842.566 kb on - strand, within ABZR87_RS08670at 1842.566 kb on - strand, within ABZR87_RS08670at 1842.566 kb on - strand, within ABZR87_RS08670at 1842.628 kb on + strand, within ABZR87_RS08670at 1842.629 kb on - strand, within ABZR87_RS08670at 1842.648 kb on + strand, within ABZR87_RS08670at 1842.656 kb on - strand, within ABZR87_RS08670at 1842.662 kb on + strand, within ABZR87_RS08670at 1842.737 kb on - strand, within ABZR87_RS08670at 1842.760 kb on + strand, within ABZR87_RS08670at 1842.760 kb on + strand, within ABZR87_RS08670at 1842.761 kb on - strand, within ABZR87_RS08670at 1842.761 kb on - strand, within ABZR87_RS08670

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra1_0.1
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1,840,068 - ABZR87_RS08655 0.54 +2.7
1,840,068 - ABZR87_RS08655 0.54 +3.0
1,840,120 - ABZR87_RS08655 0.60 +2.9
1,840,380 - ABZR87_RS08655 0.90 +5.3
1,840,382 + +2.7
1,840,431 + +3.1
1,840,504 + -0.2
1,840,505 - +0.1
1,840,505 - -0.8
1,840,561 - ABZR87_RS08660 0.16 +0.9
1,840,581 - ABZR87_RS08660 0.20 -0.6
1,840,600 + ABZR87_RS08660 0.23 +1.1
1,840,622 + ABZR87_RS08660 0.27 +1.2
1,840,623 - ABZR87_RS08660 0.27 -0.5
1,840,720 + ABZR87_RS08660 0.45 +0.3
1,840,721 - ABZR87_RS08660 0.45 -0.0
1,840,721 - ABZR87_RS08660 0.45 -2.6
1,840,725 - ABZR87_RS08660 0.46 -0.3
1,840,725 - ABZR87_RS08660 0.46 +0.4
1,840,725 - ABZR87_RS08660 0.46 -1.3
1,840,725 - ABZR87_RS08660 0.46 -0.3
1,840,777 + ABZR87_RS08660 0.55 -0.3
1,840,840 + ABZR87_RS08660 0.67 -1.5
1,840,841 - ABZR87_RS08660 0.67 +2.3
1,840,841 - ABZR87_RS08660 0.67 -0.9
1,840,864 - ABZR87_RS08660 0.71 -0.5
1,840,878 + ABZR87_RS08660 0.74 -1.0
1,840,879 - ABZR87_RS08660 0.74 -1.6
1,840,879 - ABZR87_RS08660 0.74 -1.8
1,840,880 - ABZR87_RS08660 0.74 -2.1
1,840,881 + ABZR87_RS08660 0.74 +0.4
1,840,881 + ABZR87_RS08660 0.74 +1.4
1,840,881 + ABZR87_RS08660 0.74 +0.5
1,840,881 + ABZR87_RS08660 0.74 +0.2
1,840,881 + ABZR87_RS08660 0.74 +0.6
1,840,882 - ABZR87_RS08660 0.74 +1.1
1,840,882 - ABZR87_RS08660 0.74 +0.1
1,840,904 + ABZR87_RS08660 0.79 +0.1
1,840,996 + -0.7
1,840,997 - +0.5
1,841,019 + -0.0
1,841,019 + -1.0
1,841,020 - +1.7
1,841,044 + +0.6
1,841,065 - +5.3
1,841,065 - +5.7
1,841,068 + +7.1
1,841,168 + ABZR87_RS08665 0.15 +5.4
1,841,168 + ABZR87_RS08665 0.15 +4.7
1,841,169 - ABZR87_RS08665 0.15 +5.9
1,841,234 + ABZR87_RS08665 0.24 +5.0
1,841,234 + ABZR87_RS08665 0.24 +6.2
1,841,235 - ABZR87_RS08665 0.24 +5.5
1,841,235 - ABZR87_RS08665 0.24 +5.4
1,841,255 + ABZR87_RS08665 0.27 +6.3
1,841,255 + ABZR87_RS08665 0.27 +7.4
1,841,256 - ABZR87_RS08665 0.27 +5.9
1,841,256 - ABZR87_RS08665 0.27 +3.4
1,841,256 - ABZR87_RS08665 0.27 +4.6
1,841,256 - ABZR87_RS08665 0.27 +3.7
1,841,265 + ABZR87_RS08665 0.28 +5.4
1,841,265 + ABZR87_RS08665 0.28 +6.3
1,841,266 - ABZR87_RS08665 0.29 +6.9
1,841,266 - ABZR87_RS08665 0.29 +4.9
1,841,266 - ABZR87_RS08665 0.29 +5.3
1,841,266 - ABZR87_RS08665 0.29 +5.3
1,841,266 - ABZR87_RS08665 0.29 +6.4
1,841,266 - ABZR87_RS08665 0.29 +5.4
1,841,285 - ABZR87_RS08665 0.31 +5.9
1,841,285 - ABZR87_RS08665 0.31 +4.5
1,841,285 - ABZR87_RS08665 0.31 +5.7
1,841,285 - ABZR87_RS08665 0.31 +5.6
1,841,292 + ABZR87_RS08665 0.32 +5.6
1,841,389 - ABZR87_RS08665 0.45 +5.7
1,841,445 + ABZR87_RS08665 0.53 +6.4
1,841,446 - ABZR87_RS08665 0.53 +5.9
1,841,617 - ABZR87_RS08665 0.76 +5.5
1,841,660 + ABZR87_RS08665 0.82 +6.2
1,841,693 + ABZR87_RS08665 0.86 +5.9
1,841,705 - ABZR87_RS08665 0.88 +5.8
1,841,705 - ABZR87_RS08665 0.88 +5.6
1,841,755 - +3.7
1,841,793 + +5.4
1,841,793 + +5.1
1,841,793 + +5.0
1,841,793 + +4.7
1,841,824 + +5.4
1,841,825 - +5.0
1,841,855 + +4.5
1,841,856 - +4.0
1,841,919 + ABZR87_RS08670 0.12 +5.5
1,841,981 + ABZR87_RS08670 0.18 +5.1
1,842,001 - ABZR87_RS08670 0.20 +5.0
1,842,119 + ABZR87_RS08670 0.30 +7.0
1,842,161 - ABZR87_RS08670 0.34 +4.1
1,842,180 + ABZR87_RS08670 0.36 +4.8
1,842,181 - ABZR87_RS08670 0.36 +4.2
1,842,184 + ABZR87_RS08670 0.36 +3.9
1,842,187 - ABZR87_RS08670 0.36 +5.7
1,842,198 + ABZR87_RS08670 0.37 +5.5
1,842,257 - ABZR87_RS08670 0.43 +6.1
1,842,259 + ABZR87_RS08670 0.43 +4.7
1,842,259 + ABZR87_RS08670 0.43 +3.3
1,842,259 + ABZR87_RS08670 0.43 +2.8
1,842,260 - ABZR87_RS08670 0.43 +3.5
1,842,260 - ABZR87_RS08670 0.43 +5.5
1,842,260 - ABZR87_RS08670 0.43 +6.7
1,842,260 - ABZR87_RS08670 0.43 +5.6
1,842,282 + ABZR87_RS08670 0.45 +4.1
1,842,282 + ABZR87_RS08670 0.45 +5.3
1,842,282 + ABZR87_RS08670 0.45 +1.0
1,842,283 - ABZR87_RS08670 0.45 +4.8
1,842,283 - ABZR87_RS08670 0.45 +2.1
1,842,284 + ABZR87_RS08670 0.45 +6.1
1,842,327 + ABZR87_RS08670 0.49 +5.8
1,842,327 + ABZR87_RS08670 0.49 +4.2
1,842,328 - ABZR87_RS08670 0.49 +5.1
1,842,329 + ABZR87_RS08670 0.49 +3.4
1,842,329 + ABZR87_RS08670 0.49 +4.5
1,842,351 + ABZR87_RS08670 0.51 +5.5
1,842,352 - ABZR87_RS08670 0.51 +5.5
1,842,445 + ABZR87_RS08670 0.59 +3.8
1,842,445 + ABZR87_RS08670 0.59 +1.7
1,842,445 + ABZR87_RS08670 0.59 +5.1
1,842,445 + ABZR87_RS08670 0.59 +5.5
1,842,445 + ABZR87_RS08670 0.59 +3.5
1,842,445 + ABZR87_RS08670 0.59 +1.1
1,842,445 + ABZR87_RS08670 0.59 +5.3
1,842,445 + ABZR87_RS08670 0.59 +5.0
1,842,446 - ABZR87_RS08670 0.59 +3.7
1,842,446 - ABZR87_RS08670 0.59 +6.3
1,842,446 - ABZR87_RS08670 0.59 +6.4
1,842,446 - ABZR87_RS08670 0.59 +2.7
1,842,446 - ABZR87_RS08670 0.59 +4.4
1,842,446 - ABZR87_RS08670 0.59 +0.1
1,842,446 - ABZR87_RS08670 0.59 +5.0
1,842,446 - ABZR87_RS08670 0.59 +4.5
1,842,446 - ABZR87_RS08670 0.59 +5.9
1,842,446 - ABZR87_RS08670 0.59 +4.4
1,842,446 - ABZR87_RS08670 0.59 +5.6
1,842,446 - ABZR87_RS08670 0.59 +6.0
1,842,499 + ABZR87_RS08670 0.64 +3.7
1,842,499 + ABZR87_RS08670 0.64 +6.2
1,842,500 - ABZR87_RS08670 0.64 +5.5
1,842,500 - ABZR87_RS08670 0.64 +6.4
1,842,552 + ABZR87_RS08670 0.69 +3.7
1,842,566 - ABZR87_RS08670 0.70 +5.8
1,842,566 - ABZR87_RS08670 0.70 +4.0
1,842,566 - ABZR87_RS08670 0.70 +6.3
1,842,628 + ABZR87_RS08670 0.76 +5.8
1,842,629 - ABZR87_RS08670 0.76 +6.1
1,842,648 + ABZR87_RS08670 0.77 +4.3
1,842,656 - ABZR87_RS08670 0.78 +4.7
1,842,662 + ABZR87_RS08670 0.79 +5.4
1,842,737 - ABZR87_RS08670 0.85 +5.5
1,842,760 + ABZR87_RS08670 0.87 -0.1
1,842,760 + ABZR87_RS08670 0.87 +3.4
1,842,761 - ABZR87_RS08670 0.88 +0.7
1,842,761 - ABZR87_RS08670 0.88 +4.4

Or see this region's nucleotide sequence