Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS08150 and ABZR87_RS08155 are separated by 162 nucleotides ABZR87_RS08155 and ABZR87_RS08160 are separated by 323 nucleotides
ABZR87_RS08150: ABZR87_RS08150 - EAL domain-containing protein, at 1,731,072 to 1,733,795
_RS08150
ABZR87_RS08155: ABZR87_RS08155 - methyl-accepting chemotaxis protein, at 1,733,958 to 1,735,370
_RS08155
ABZR87_RS08160: ABZR87_RS08160 - MFS transporter, at 1,735,694 to 1,737,016
_RS08160
Position (kb)
1733
1734
1735
1736 Strain fitness (log2 ratio)
-2
-1
0
1 at 1732.986 kb on + strand, within ABZR87_RS08150 at 1732.986 kb on + strand, within ABZR87_RS08150 at 1733.035 kb on - strand, within ABZR87_RS08150 at 1733.035 kb on - strand, within ABZR87_RS08150 at 1733.035 kb on - strand, within ABZR87_RS08150 at 1733.035 kb on - strand, within ABZR87_RS08150 at 1733.116 kb on + strand, within ABZR87_RS08150 at 1733.116 kb on + strand, within ABZR87_RS08150 at 1733.116 kb on + strand, within ABZR87_RS08150 at 1733.116 kb on + strand, within ABZR87_RS08150 at 1733.116 kb on + strand, within ABZR87_RS08150 at 1733.116 kb on + strand, within ABZR87_RS08150 at 1733.116 kb on + strand, within ABZR87_RS08150 at 1733.117 kb on - strand, within ABZR87_RS08150 at 1733.117 kb on - strand, within ABZR87_RS08150 at 1733.117 kb on - strand, within ABZR87_RS08150 at 1733.117 kb on - strand, within ABZR87_RS08150 at 1733.117 kb on - strand, within ABZR87_RS08150 at 1733.117 kb on - strand, within ABZR87_RS08150 at 1733.117 kb on - strand, within ABZR87_RS08150 at 1733.117 kb on - strand, within ABZR87_RS08150 at 1733.117 kb on - strand, within ABZR87_RS08150 at 1733.117 kb on - strand, within ABZR87_RS08150 at 1733.399 kb on + strand, within ABZR87_RS08150 at 1733.793 kb on + strand at 1733.793 kb on + strand at 1733.793 kb on + strand at 1733.793 kb on + strand at 1733.794 kb on - strand at 1733.794 kb on - strand at 1733.794 kb on - strand at 1733.794 kb on - strand at 1733.826 kb on + strand at 1733.827 kb on - strand at 1733.837 kb on + strand at 1733.837 kb on + strand at 1733.838 kb on - strand at 1733.838 kb on - strand at 1733.852 kb on - strand at 1733.885 kb on + strand at 1733.885 kb on + strand at 1733.885 kb on + strand at 1733.885 kb on + strand at 1733.886 kb on - strand at 1733.894 kb on + strand at 1733.895 kb on - strand at 1734.932 kb on + strand, within ABZR87_RS08155 at 1734.963 kb on + strand, within ABZR87_RS08155 at 1734.964 kb on - strand, within ABZR87_RS08155 at 1734.964 kb on - strand, within ABZR87_RS08155 at 1734.964 kb on - strand, within ABZR87_RS08155 at 1734.999 kb on - strand, within ABZR87_RS08155 at 1734.999 kb on - strand, within ABZR87_RS08155 at 1734.999 kb on - strand, within ABZR87_RS08155 at 1735.097 kb on + strand, within ABZR87_RS08155 at 1735.107 kb on + strand, within ABZR87_RS08155 at 1735.108 kb on - strand, within ABZR87_RS08155 at 1735.229 kb on + strand at 1735.254 kb on + strand at 1735.255 kb on - strand at 1735.255 kb on - strand at 1735.255 kb on - strand at 1735.314 kb on + strand at 1735.315 kb on - strand at 1735.353 kb on + strand at 1735.353 kb on + strand at 1735.353 kb on + strand at 1735.353 kb on + strand at 1735.353 kb on + strand at 1735.354 kb on - strand at 1735.354 kb on - strand at 1735.492 kb on + strand at 1735.492 kb on + strand at 1735.492 kb on + strand at 1735.629 kb on + strand at 1735.629 kb on + strand at 1735.629 kb on + strand at 1735.629 kb on + strand at 1735.695 kb on + strand at 1735.696 kb on - strand at 1735.758 kb on + strand at 1735.758 kb on + strand at 1735.758 kb on + strand at 1735.759 kb on - strand at 1735.809 kb on + strand at 1735.809 kb on + strand at 1735.809 kb on + strand at 1735.810 kb on - strand at 1735.810 kb on - strand at 1735.810 kb on - strand at 1736.218 kb on - strand, within ABZR87_RS08160
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 1,732,986 + ABZR87_RS08150 0.70 -1.8 1,732,986 + ABZR87_RS08150 0.70 -1.5 1,733,035 - ABZR87_RS08150 0.72 -0.3 1,733,035 - ABZR87_RS08150 0.72 +1.7 1,733,035 - ABZR87_RS08150 0.72 +1.1 1,733,035 - ABZR87_RS08150 0.72 +0.3 1,733,116 + ABZR87_RS08150 0.75 -0.5 1,733,116 + ABZR87_RS08150 0.75 -1.5 1,733,116 + ABZR87_RS08150 0.75 -0.3 1,733,116 + ABZR87_RS08150 0.75 -0.6 1,733,116 + ABZR87_RS08150 0.75 -0.5 1,733,116 + ABZR87_RS08150 0.75 -0.9 1,733,116 + ABZR87_RS08150 0.75 +0.1 1,733,117 - ABZR87_RS08150 0.75 -0.5 1,733,117 - ABZR87_RS08150 0.75 -1.3 1,733,117 - ABZR87_RS08150 0.75 -0.2 1,733,117 - ABZR87_RS08150 0.75 -0.8 1,733,117 - ABZR87_RS08150 0.75 -1.1 1,733,117 - ABZR87_RS08150 0.75 -0.0 1,733,117 - ABZR87_RS08150 0.75 -0.6 1,733,117 - ABZR87_RS08150 0.75 +0.0 1,733,117 - ABZR87_RS08150 0.75 +0.4 1,733,117 - ABZR87_RS08150 0.75 -1.6 1,733,399 + ABZR87_RS08150 0.85 -1.5 1,733,793 + -0.3 1,733,793 + -0.5 1,733,793 + -0.9 1,733,793 + -0.5 1,733,794 - -0.8 1,733,794 - +0.4 1,733,794 - +0.8 1,733,794 - -0.5 1,733,826 + -0.9 1,733,827 - +0.5 1,733,837 + -0.1 1,733,837 + -0.8 1,733,838 - +0.7 1,733,838 - -0.3 1,733,852 - +0.1 1,733,885 + +0.7 1,733,885 + -2.2 1,733,885 + +0.3 1,733,885 + -0.5 1,733,886 - -0.5 1,733,894 + +0.2 1,733,895 - +0.1 1,734,932 + ABZR87_RS08155 0.69 -0.1 1,734,963 + ABZR87_RS08155 0.71 +1.1 1,734,964 - ABZR87_RS08155 0.71 +0.4 1,734,964 - ABZR87_RS08155 0.71 +0.2 1,734,964 - ABZR87_RS08155 0.71 +1.2 1,734,999 - ABZR87_RS08155 0.74 -0.0 1,734,999 - ABZR87_RS08155 0.74 -0.6 1,734,999 - ABZR87_RS08155 0.74 -0.4 1,735,097 + ABZR87_RS08155 0.81 -1.2 1,735,107 + ABZR87_RS08155 0.81 +0.4 1,735,108 - ABZR87_RS08155 0.81 +1.0 1,735,229 + +0.7 1,735,254 + -0.5 1,735,255 - -1.7 1,735,255 - -0.4 1,735,255 - +1.7 1,735,314 + +0.3 1,735,315 - -1.2 1,735,353 + +0.0 1,735,353 + +0.0 1,735,353 + -0.8 1,735,353 + +0.3 1,735,353 + -1.2 1,735,354 - +0.2 1,735,354 - -0.8 1,735,492 + -0.3 1,735,492 + -0.4 1,735,492 + -0.3 1,735,629 + +0.8 1,735,629 + +0.3 1,735,629 + +0.2 1,735,629 + +0.1 1,735,695 + -0.9 1,735,696 - -0.1 1,735,758 + -0.4 1,735,758 + -0.2 1,735,758 + -0.3 1,735,759 - +0.4 1,735,809 + +1.0 1,735,809 + +0.3 1,735,809 + +0.6 1,735,810 - +0.8 1,735,810 - -0.0 1,735,810 - -2.7 1,736,218 - ABZR87_RS08160 0.40 -1.2
Or see this region's nucleotide sequence