Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS07570 and ABZR87_RS07575 are separated by 12 nucleotides ABZR87_RS07575 and ABZR87_RS07580 are separated by 231 nucleotides ABZR87_RS07580 and ABZR87_RS07585 are separated by 43 nucleotides ABZR87_RS07585 and ABZR87_RS07590 are separated by 126 nucleotides
ABZR87_RS07570: ABZR87_RS07570 - 50S ribosomal protein L13, at 1,607,109 to 1,607,537
_RS07570
ABZR87_RS07575: ABZR87_RS07575 - 30S ribosomal protein S9, at 1,607,550 to 1,607,942
_RS07575
ABZR87_RS07580: ABZR87_RS07580 - DUF6776 family protein, at 1,608,174 to 1,608,929
_RS07580
ABZR87_RS07585: ABZR87_RS07585 - polymer-forming cytoskeletal protein, at 1,608,973 to 1,609,377
_RS07585
ABZR87_RS07590: ABZR87_RS07590 - iron-sulfur cluster insertion protein ErpA, at 1,609,504 to 1,609,878
_RS07590
Position (kb)
1608
1609 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1608.077 kb on + strand at 1608.078 kb on - strand at 1608.108 kb on + strand at 1608.108 kb on + strand at 1608.108 kb on + strand at 1608.108 kb on + strand at 1608.108 kb on + strand at 1608.109 kb on - strand at 1608.229 kb on + strand at 1608.229 kb on + strand at 1608.229 kb on + strand at 1608.230 kb on - strand at 1608.230 kb on - strand at 1608.277 kb on + strand, within ABZR87_RS07580 at 1608.277 kb on + strand, within ABZR87_RS07580 at 1608.277 kb on + strand, within ABZR87_RS07580 at 1608.278 kb on - strand, within ABZR87_RS07580 at 1608.278 kb on - strand, within ABZR87_RS07580 at 1608.585 kb on + strand, within ABZR87_RS07580 at 1608.585 kb on + strand, within ABZR87_RS07580 at 1608.586 kb on - strand, within ABZR87_RS07580 at 1608.586 kb on - strand, within ABZR87_RS07580 at 1608.586 kb on - strand, within ABZR87_RS07580 at 1608.746 kb on + strand, within ABZR87_RS07580 at 1608.746 kb on + strand, within ABZR87_RS07580 at 1608.747 kb on - strand, within ABZR87_RS07580 at 1608.747 kb on - strand, within ABZR87_RS07580 at 1608.816 kb on + strand, within ABZR87_RS07580 at 1608.816 kb on + strand, within ABZR87_RS07580 at 1608.817 kb on - strand, within ABZR87_RS07580 at 1608.817 kb on - strand, within ABZR87_RS07580 at 1608.955 kb on + strand at 1608.956 kb on - strand at 1609.013 kb on + strand at 1609.014 kb on - strand, within ABZR87_RS07585 at 1609.014 kb on - strand, within ABZR87_RS07585 at 1609.096 kb on + strand, within ABZR87_RS07585 at 1609.096 kb on + strand, within ABZR87_RS07585 at 1609.097 kb on - strand, within ABZR87_RS07585 at 1609.097 kb on - strand, within ABZR87_RS07585 at 1609.097 kb on - strand, within ABZR87_RS07585 at 1609.264 kb on + strand, within ABZR87_RS07585 at 1609.264 kb on + strand, within ABZR87_RS07585 at 1609.265 kb on - strand, within ABZR87_RS07585 at 1609.265 kb on - strand, within ABZR87_RS07585 at 1609.467 kb on + strand at 1609.467 kb on + strand at 1609.893 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 1,608,077 + -0.3 1,608,078 - +0.0 1,608,108 + +0.2 1,608,108 + -0.5 1,608,108 + -0.4 1,608,108 + +0.3 1,608,108 + -0.7 1,608,109 - +0.4 1,608,229 + +1.3 1,608,229 + +3.7 1,608,229 + +0.6 1,608,230 - +0.2 1,608,230 - -1.5 1,608,277 + ABZR87_RS07580 0.14 +1.1 1,608,277 + ABZR87_RS07580 0.14 -0.6 1,608,277 + ABZR87_RS07580 0.14 -0.2 1,608,278 - ABZR87_RS07580 0.14 +0.4 1,608,278 - ABZR87_RS07580 0.14 +1.1 1,608,585 + ABZR87_RS07580 0.54 +0.4 1,608,585 + ABZR87_RS07580 0.54 -1.6 1,608,586 - ABZR87_RS07580 0.54 +3.2 1,608,586 - ABZR87_RS07580 0.54 +2.7 1,608,586 - ABZR87_RS07580 0.54 +0.4 1,608,746 + ABZR87_RS07580 0.76 +0.5 1,608,746 + ABZR87_RS07580 0.76 +2.7 1,608,747 - ABZR87_RS07580 0.76 +0.3 1,608,747 - ABZR87_RS07580 0.76 -1.2 1,608,816 + ABZR87_RS07580 0.85 +0.7 1,608,816 + ABZR87_RS07580 0.85 -0.4 1,608,817 - ABZR87_RS07580 0.85 -0.1 1,608,817 - ABZR87_RS07580 0.85 +0.5 1,608,955 + -0.1 1,608,956 - +1.0 1,609,013 + -0.7 1,609,014 - ABZR87_RS07585 0.10 +1.4 1,609,014 - ABZR87_RS07585 0.10 +0.7 1,609,096 + ABZR87_RS07585 0.30 -0.6 1,609,096 + ABZR87_RS07585 0.30 +0.4 1,609,097 - ABZR87_RS07585 0.31 +1.0 1,609,097 - ABZR87_RS07585 0.31 +0.6 1,609,097 - ABZR87_RS07585 0.31 -0.7 1,609,264 + ABZR87_RS07585 0.72 +0.4 1,609,264 + ABZR87_RS07585 0.72 +0.0 1,609,265 - ABZR87_RS07585 0.72 +0.4 1,609,265 - ABZR87_RS07585 0.72 -0.1 1,609,467 + +0.5 1,609,467 + +0.5 1,609,893 - +0.2
Or see this region's nucleotide sequence