Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS07540 and ABZR87_RS07545 are separated by 167 nucleotides ABZR87_RS07545 and ABZR87_RS07550 are separated by 33 nucleotides
ABZR87_RS07540: ABZR87_RS07540 - class II glutamine amidotransferase, at 1,601,436 to 1,602,266
_RS07540
ABZR87_RS07545: ABZR87_RS07545 - glycerate kinase, at 1,602,434 to 1,603,732
_RS07545
ABZR87_RS07550: ABZR87_RS07550 - dihydroorotase, at 1,603,766 to 1,604,800
_RS07550
Position (kb)
1602
1603
1604 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1601.620 kb on + strand, within ABZR87_RS07540 at 1601.620 kb on + strand, within ABZR87_RS07540 at 1601.620 kb on + strand, within ABZR87_RS07540 at 1601.620 kb on + strand, within ABZR87_RS07540 at 1601.621 kb on - strand, within ABZR87_RS07540 at 1601.692 kb on + strand, within ABZR87_RS07540 at 1601.692 kb on + strand, within ABZR87_RS07540 at 1601.692 kb on + strand, within ABZR87_RS07540 at 1601.692 kb on + strand, within ABZR87_RS07540 at 1601.692 kb on + strand, within ABZR87_RS07540 at 1601.693 kb on - strand, within ABZR87_RS07540 at 1601.693 kb on - strand, within ABZR87_RS07540 at 1601.693 kb on - strand, within ABZR87_RS07540 at 1601.693 kb on - strand, within ABZR87_RS07540 at 1601.693 kb on - strand, within ABZR87_RS07540 at 1601.693 kb on - strand, within ABZR87_RS07540 at 1601.693 kb on - strand, within ABZR87_RS07540 at 1601.693 kb on - strand, within ABZR87_RS07540 at 1601.695 kb on + strand, within ABZR87_RS07540 at 1601.695 kb on + strand, within ABZR87_RS07540 at 1601.696 kb on - strand, within ABZR87_RS07540 at 1601.696 kb on - strand, within ABZR87_RS07540 at 1601.696 kb on - strand, within ABZR87_RS07540 at 1601.761 kb on + strand, within ABZR87_RS07540 at 1601.797 kb on + strand, within ABZR87_RS07540 at 1601.886 kb on - strand, within ABZR87_RS07540 at 1601.902 kb on + strand, within ABZR87_RS07540 at 1601.902 kb on + strand, within ABZR87_RS07540 at 1601.903 kb on - strand, within ABZR87_RS07540 at 1602.068 kb on - strand, within ABZR87_RS07540 at 1602.291 kb on - strand at 1602.295 kb on + strand at 1602.296 kb on - strand at 1602.302 kb on + strand at 1602.479 kb on + strand at 1602.479 kb on + strand at 1602.480 kb on - strand at 1602.480 kb on - strand at 1602.480 kb on - strand at 1602.480 kb on - strand at 1602.480 kb on - strand at 1602.480 kb on - strand at 1602.480 kb on - strand at 1602.617 kb on + strand, within ABZR87_RS07545 at 1602.617 kb on + strand, within ABZR87_RS07545 at 1602.617 kb on + strand, within ABZR87_RS07545 at 1602.618 kb on - strand, within ABZR87_RS07545 at 1602.618 kb on - strand, within ABZR87_RS07545 at 1602.660 kb on - strand, within ABZR87_RS07545 at 1602.660 kb on - strand, within ABZR87_RS07545 at 1602.916 kb on + strand, within ABZR87_RS07545 at 1602.917 kb on - strand, within ABZR87_RS07545 at 1602.917 kb on - strand, within ABZR87_RS07545 at 1603.064 kb on + strand, within ABZR87_RS07545 at 1603.064 kb on + strand, within ABZR87_RS07545 at 1603.064 kb on + strand, within ABZR87_RS07545 at 1603.065 kb on - strand, within ABZR87_RS07545 at 1603.065 kb on - strand, within ABZR87_RS07545 at 1603.107 kb on + strand, within ABZR87_RS07545 at 1603.189 kb on + strand, within ABZR87_RS07545 at 1603.189 kb on + strand, within ABZR87_RS07545 at 1603.190 kb on - strand, within ABZR87_RS07545 at 1603.190 kb on - strand, within ABZR87_RS07545 at 1603.190 kb on - strand, within ABZR87_RS07545 at 1603.190 kb on - strand, within ABZR87_RS07545 at 1603.210 kb on + strand, within ABZR87_RS07545 at 1603.251 kb on + strand, within ABZR87_RS07545 at 1603.291 kb on + strand, within ABZR87_RS07545 at 1603.327 kb on - strand, within ABZR87_RS07545 at 1603.327 kb on - strand, within ABZR87_RS07545 at 1603.508 kb on + strand, within ABZR87_RS07545 at 1603.508 kb on + strand, within ABZR87_RS07545 at 1603.509 kb on - strand, within ABZR87_RS07545 at 1603.509 kb on - strand, within ABZR87_RS07545 at 1603.525 kb on + strand, within ABZR87_RS07545 at 1603.643 kb on + strand at 1603.643 kb on + strand at 1603.644 kb on - strand at 1603.644 kb on - strand at 1603.644 kb on - strand at 1603.645 kb on - strand at 1603.709 kb on + strand at 1603.709 kb on + strand at 1603.780 kb on + strand at 1603.780 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 1,601,620 + ABZR87_RS07540 0.22 -0.3 1,601,620 + ABZR87_RS07540 0.22 +0.7 1,601,620 + ABZR87_RS07540 0.22 +0.9 1,601,620 + ABZR87_RS07540 0.22 -0.6 1,601,621 - ABZR87_RS07540 0.22 +0.0 1,601,692 + ABZR87_RS07540 0.31 -1.4 1,601,692 + ABZR87_RS07540 0.31 -1.2 1,601,692 + ABZR87_RS07540 0.31 +0.6 1,601,692 + ABZR87_RS07540 0.31 -0.4 1,601,692 + ABZR87_RS07540 0.31 -2.5 1,601,693 - ABZR87_RS07540 0.31 -0.1 1,601,693 - ABZR87_RS07540 0.31 +0.8 1,601,693 - ABZR87_RS07540 0.31 -0.4 1,601,693 - ABZR87_RS07540 0.31 +0.8 1,601,693 - ABZR87_RS07540 0.31 +0.6 1,601,693 - ABZR87_RS07540 0.31 -0.7 1,601,693 - ABZR87_RS07540 0.31 +0.8 1,601,693 - ABZR87_RS07540 0.31 -1.1 1,601,695 + ABZR87_RS07540 0.31 -3.0 1,601,695 + ABZR87_RS07540 0.31 -0.7 1,601,696 - ABZR87_RS07540 0.31 -1.1 1,601,696 - ABZR87_RS07540 0.31 -0.2 1,601,696 - ABZR87_RS07540 0.31 -0.4 1,601,761 + ABZR87_RS07540 0.39 -0.7 1,601,797 + ABZR87_RS07540 0.43 -0.5 1,601,886 - ABZR87_RS07540 0.54 -1.4 1,601,902 + ABZR87_RS07540 0.56 -0.1 1,601,902 + ABZR87_RS07540 0.56 -0.3 1,601,903 - ABZR87_RS07540 0.56 -0.7 1,602,068 - ABZR87_RS07540 0.76 -1.3 1,602,291 - -0.1 1,602,295 + -1.0 1,602,296 - +1.8 1,602,302 + -1.1 1,602,479 + -1.7 1,602,479 + +0.3 1,602,480 - +2.3 1,602,480 - +1.5 1,602,480 - -0.3 1,602,480 - +0.7 1,602,480 - +1.1 1,602,480 - +1.5 1,602,480 - +0.9 1,602,617 + ABZR87_RS07545 0.14 -1.4 1,602,617 + ABZR87_RS07545 0.14 -2.7 1,602,617 + ABZR87_RS07545 0.14 -2.6 1,602,618 - ABZR87_RS07545 0.14 +1.7 1,602,618 - ABZR87_RS07545 0.14 +1.0 1,602,660 - ABZR87_RS07545 0.17 +2.0 1,602,660 - ABZR87_RS07545 0.17 +2.2 1,602,916 + ABZR87_RS07545 0.37 -3.1 1,602,917 - ABZR87_RS07545 0.37 +0.7 1,602,917 - ABZR87_RS07545 0.37 +1.1 1,603,064 + ABZR87_RS07545 0.48 -1.8 1,603,064 + ABZR87_RS07545 0.48 -1.9 1,603,064 + ABZR87_RS07545 0.48 -0.7 1,603,065 - ABZR87_RS07545 0.49 +0.3 1,603,065 - ABZR87_RS07545 0.49 +0.9 1,603,107 + ABZR87_RS07545 0.52 -0.5 1,603,189 + ABZR87_RS07545 0.58 +0.6 1,603,189 + ABZR87_RS07545 0.58 +0.5 1,603,190 - ABZR87_RS07545 0.58 +1.4 1,603,190 - ABZR87_RS07545 0.58 +1.4 1,603,190 - ABZR87_RS07545 0.58 +1.0 1,603,190 - ABZR87_RS07545 0.58 +2.2 1,603,210 + ABZR87_RS07545 0.60 -0.4 1,603,251 + ABZR87_RS07545 0.63 -0.9 1,603,291 + ABZR87_RS07545 0.66 -1.6 1,603,327 - ABZR87_RS07545 0.69 +1.3 1,603,327 - ABZR87_RS07545 0.69 -1.4 1,603,508 + ABZR87_RS07545 0.83 -2.6 1,603,508 + ABZR87_RS07545 0.83 -0.2 1,603,509 - ABZR87_RS07545 0.83 +1.3 1,603,509 - ABZR87_RS07545 0.83 +1.1 1,603,525 + ABZR87_RS07545 0.84 +0.6 1,603,643 + +0.1 1,603,643 + -0.9 1,603,644 - +1.8 1,603,644 - +2.7 1,603,644 - +1.7 1,603,645 - +2.7 1,603,709 + +0.1 1,603,709 + +0.8 1,603,780 + +3.9 1,603,780 + +2.7
Or see this region's nucleotide sequence