Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04285 and ABZR87_RS04290 are separated by 16 nucleotides ABZR87_RS04290 and ABZR87_RS04295 are separated by 633 nucleotides
ABZR87_RS04285: ABZR87_RS04285 - sensor histidine kinase, at 893,093 to 894,766
_RS04285
ABZR87_RS04290: ABZR87_RS04290 - SET domain-containing protein-lysine N-methyltransferase, at 894,783 to 895,322
_RS04290
ABZR87_RS04295: ABZR87_RS04295 - HU family DNA-binding protein, at 895,956 to 896,234
_RS04295
Position (kb) 894
895
896 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 894.118 kb on - strand, within ABZR87_RS04285 at 894.443 kb on + strand, within ABZR87_RS04285 at 894.443 kb on + strand, within ABZR87_RS04285 at 894.443 kb on + strand, within ABZR87_RS04285 at 894.443 kb on + strand, within ABZR87_RS04285 at 894.443 kb on + strand, within ABZR87_RS04285 at 894.444 kb on - strand, within ABZR87_RS04285 at 894.444 kb on - strand, within ABZR87_RS04285 at 894.444 kb on - strand, within ABZR87_RS04285 at 894.644 kb on - strand at 894.764 kb on + strand at 894.784 kb on + strand at 894.904 kb on + strand, within ABZR87_RS04290 at 894.905 kb on - strand, within ABZR87_RS04290 at 894.905 kb on - strand, within ABZR87_RS04290 at 894.905 kb on - strand, within ABZR87_RS04290 at 894.905 kb on - strand, within ABZR87_RS04290 at 894.905 kb on - strand, within ABZR87_RS04290 at 894.910 kb on + strand, within ABZR87_RS04290 at 894.910 kb on + strand, within ABZR87_RS04290 at 894.910 kb on + strand, within ABZR87_RS04290 at 894.911 kb on - strand, within ABZR87_RS04290 at 894.911 kb on - strand, within ABZR87_RS04290 at 894.911 kb on - strand, within ABZR87_RS04290 at 894.911 kb on - strand, within ABZR87_RS04290 at 894.911 kb on - strand, within ABZR87_RS04290 at 894.911 kb on - strand, within ABZR87_RS04290 at 894.911 kb on - strand, within ABZR87_RS04290 at 895.033 kb on + strand, within ABZR87_RS04290 at 895.034 kb on - strand, within ABZR87_RS04290 at 895.072 kb on + strand, within ABZR87_RS04290 at 895.072 kb on + strand, within ABZR87_RS04290 at 895.073 kb on - strand, within ABZR87_RS04290 at 895.073 kb on - strand, within ABZR87_RS04290 at 895.073 kb on - strand, within ABZR87_RS04290 at 895.073 kb on - strand, within ABZR87_RS04290 at 895.073 kb on - strand, within ABZR87_RS04290 at 895.150 kb on + strand, within ABZR87_RS04290 at 895.150 kb on + strand, within ABZR87_RS04290 at 895.150 kb on + strand, within ABZR87_RS04290 at 895.150 kb on + strand, within ABZR87_RS04290 at 895.151 kb on - strand, within ABZR87_RS04290 at 895.151 kb on - strand, within ABZR87_RS04290 at 895.192 kb on + strand, within ABZR87_RS04290 at 895.192 kb on + strand, within ABZR87_RS04290 at 895.192 kb on + strand, within ABZR87_RS04290 at 895.192 kb on + strand, within ABZR87_RS04290 at 895.192 kb on + strand, within ABZR87_RS04290 at 895.192 kb on + strand, within ABZR87_RS04290 at 895.193 kb on - strand, within ABZR87_RS04290 at 895.193 kb on - strand, within ABZR87_RS04290 at 895.193 kb on - strand, within ABZR87_RS04290 at 895.193 kb on - strand, within ABZR87_RS04290 at 895.193 kb on - strand, within ABZR87_RS04290 at 895.193 kb on - strand, within ABZR87_RS04290 at 895.193 kb on - strand, within ABZR87_RS04290 at 895.193 kb on - strand, within ABZR87_RS04290 at 895.193 kb on - strand, within ABZR87_RS04290 at 895.337 kb on + strand at 895.337 kb on + strand at 895.338 kb on - strand at 895.378 kb on + strand at 895.378 kb on + strand at 895.378 kb on + strand at 895.378 kb on + strand at 895.379 kb on - strand at 895.379 kb on - strand at 895.379 kb on - strand at 895.461 kb on + strand at 895.462 kb on - strand at 895.462 kb on - strand at 895.465 kb on + strand at 895.465 kb on + strand at 895.465 kb on + strand at 895.465 kb on + strand at 895.562 kb on + strand at 895.563 kb on - strand at 895.563 kb on - strand at 895.563 kb on - strand at 895.563 kb on - strand at 895.563 kb on - strand at 895.563 kb on - strand at 895.620 kb on + strand at 895.621 kb on - strand at 895.634 kb on + strand at 895.638 kb on + strand at 895.652 kb on - strand at 895.661 kb on + strand at 895.662 kb on - strand at 895.662 kb on - strand at 895.665 kb on + strand at 895.665 kb on + strand at 895.665 kb on + strand at 895.668 kb on + strand at 895.668 kb on + strand at 895.669 kb on - strand at 895.669 kb on - strand at 895.669 kb on - strand at 895.669 kb on - strand at 895.669 kb on - strand at 895.671 kb on + strand at 895.671 kb on + strand at 895.671 kb on + strand at 895.671 kb on + strand at 895.671 kb on + strand at 895.671 kb on + strand at 895.672 kb on - strand at 895.672 kb on - strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.680 kb on + strand at 895.681 kb on + strand at 895.681 kb on - strand at 895.682 kb on + strand at 895.682 kb on + strand at 895.682 kb on + strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.686 kb on + strand at 895.686 kb on + strand at 895.686 kb on + strand at 895.686 kb on + strand at 895.686 kb on + strand at 895.687 kb on - strand at 895.687 kb on - strand at 895.687 kb on - strand at 895.687 kb on - strand at 895.687 kb on - strand at 895.698 kb on + strand at 895.698 kb on + strand at 895.699 kb on - strand at 895.804 kb on + strand at 895.804 kb on + strand at 895.805 kb on - strand at 895.805 kb on - strand at 895.847 kb on + strand at 895.848 kb on - strand at 895.848 kb on - strand at 895.930 kb on + strand at 895.930 kb on + strand at 895.931 kb on - strand at 895.931 kb on - strand at 895.931 kb on - strand at 895.931 kb on - strand at 895.931 kb on - strand at 895.934 kb on + strand at 895.935 kb on - strand at 895.935 kb on - strand at 895.935 kb on - strand at 895.996 kb on + strand, within ABZR87_RS04295 at 895.996 kb on + strand, within ABZR87_RS04295 at 895.997 kb on - strand, within ABZR87_RS04295 at 896.102 kb on + strand, within ABZR87_RS04295 at 896.102 kb on + strand, within ABZR87_RS04295 at 896.102 kb on + strand, within ABZR87_RS04295 at 896.132 kb on + strand, within ABZR87_RS04295 at 896.132 kb on + strand, within ABZR87_RS04295 at 896.133 kb on - strand, within ABZR87_RS04295 at 896.133 kb on - strand, within ABZR87_RS04295 at 896.133 kb on - strand, within ABZR87_RS04295 at 896.133 kb on - strand, within ABZR87_RS04295
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 894,118 - ABZR87_RS04285 0.61 +0.4 894,443 + ABZR87_RS04285 0.81 +0.4 894,443 + ABZR87_RS04285 0.81 +0.0 894,443 + ABZR87_RS04285 0.81 -1.3 894,443 + ABZR87_RS04285 0.81 +1.6 894,443 + ABZR87_RS04285 0.81 +0.8 894,444 - ABZR87_RS04285 0.81 -2.7 894,444 - ABZR87_RS04285 0.81 -0.3 894,444 - ABZR87_RS04285 0.81 +0.6 894,644 - -0.2 894,764 + +0.3 894,784 + +0.6 894,904 + ABZR87_RS04290 0.22 -0.2 894,905 - ABZR87_RS04290 0.23 -0.1 894,905 - ABZR87_RS04290 0.23 -0.7 894,905 - ABZR87_RS04290 0.23 +0.6 894,905 - ABZR87_RS04290 0.23 -0.3 894,905 - ABZR87_RS04290 0.23 +0.4 894,910 + ABZR87_RS04290 0.24 +0.3 894,910 + ABZR87_RS04290 0.24 +0.2 894,910 + ABZR87_RS04290 0.24 -1.2 894,911 - ABZR87_RS04290 0.24 -0.6 894,911 - ABZR87_RS04290 0.24 -0.2 894,911 - ABZR87_RS04290 0.24 -1.3 894,911 - ABZR87_RS04290 0.24 -1.6 894,911 - ABZR87_RS04290 0.24 +1.3 894,911 - ABZR87_RS04290 0.24 -0.1 894,911 - ABZR87_RS04290 0.24 -0.8 895,033 + ABZR87_RS04290 0.46 -1.8 895,034 - ABZR87_RS04290 0.46 +1.6 895,072 + ABZR87_RS04290 0.54 -0.2 895,072 + ABZR87_RS04290 0.54 -1.4 895,073 - ABZR87_RS04290 0.54 -0.2 895,073 - ABZR87_RS04290 0.54 -1.0 895,073 - ABZR87_RS04290 0.54 -0.5 895,073 - ABZR87_RS04290 0.54 +0.6 895,073 - ABZR87_RS04290 0.54 -0.6 895,150 + ABZR87_RS04290 0.68 -0.6 895,150 + ABZR87_RS04290 0.68 -0.2 895,150 + ABZR87_RS04290 0.68 +1.2 895,150 + ABZR87_RS04290 0.68 +0.1 895,151 - ABZR87_RS04290 0.68 -0.5 895,151 - ABZR87_RS04290 0.68 +0.0 895,192 + ABZR87_RS04290 0.76 -0.3 895,192 + ABZR87_RS04290 0.76 -1.8 895,192 + ABZR87_RS04290 0.76 -0.8 895,192 + ABZR87_RS04290 0.76 -1.0 895,192 + ABZR87_RS04290 0.76 -0.2 895,192 + ABZR87_RS04290 0.76 -1.8 895,193 - ABZR87_RS04290 0.76 -1.0 895,193 - ABZR87_RS04290 0.76 -0.9 895,193 - ABZR87_RS04290 0.76 +1.6 895,193 - ABZR87_RS04290 0.76 -0.8 895,193 - ABZR87_RS04290 0.76 +0.7 895,193 - ABZR87_RS04290 0.76 +0.0 895,193 - ABZR87_RS04290 0.76 +0.0 895,193 - ABZR87_RS04290 0.76 -0.7 895,193 - ABZR87_RS04290 0.76 -1.3 895,337 + -0.8 895,337 + -1.5 895,338 - -0.8 895,378 + +0.3 895,378 + -0.9 895,378 + -0.4 895,378 + -0.2 895,379 - +0.5 895,379 - -0.9 895,379 - -0.0 895,461 + -0.3 895,462 - +0.5 895,462 - +1.8 895,465 + -0.6 895,465 + +0.5 895,465 + -0.8 895,465 + -1.7 895,562 + -1.6 895,563 - -1.7 895,563 - -0.3 895,563 - -0.8 895,563 - -0.9 895,563 - +0.3 895,563 - +1.1 895,620 + +0.6 895,621 - +0.1 895,634 + -1.1 895,638 + +1.3 895,652 - +0.1 895,661 + +0.7 895,662 - -1.3 895,662 - -0.8 895,665 + +0.4 895,665 + -0.6 895,665 + +0.6 895,668 + -1.1 895,668 + -0.8 895,669 - -2.4 895,669 - +1.0 895,669 - -1.2 895,669 - -0.7 895,669 - -0.7 895,671 + +1.2 895,671 + +0.8 895,671 + -0.3 895,671 + +0.6 895,671 + +0.1 895,671 + -0.0 895,672 - +0.1 895,672 - -0.5 895,674 + +1.1 895,674 + -1.2 895,674 + -0.5 895,674 + -0.4 895,674 + -3.3 895,674 + -0.8 895,674 + +0.2 895,674 + -2.2 895,674 + +0.1 895,674 + -0.2 895,674 + -1.7 895,674 + -0.9 895,675 - -0.4 895,675 - +0.4 895,675 - +0.8 895,675 - -0.8 895,675 - +0.6 895,675 - -0.2 895,675 - -1.3 895,675 - -0.1 895,675 - -0.3 895,675 - +2.2 895,675 - -0.3 895,675 - -0.2 895,675 - +0.3 895,680 + +0.7 895,681 + -0.2 895,681 - -0.8 895,682 + +0.1 895,682 + -0.1 895,682 + +0.7 895,683 - -1.5 895,683 - -0.1 895,683 - +0.3 895,683 - -0.3 895,683 - -0.3 895,683 - +0.5 895,683 - -1.2 895,683 - -0.8 895,683 - -0.4 895,683 - +1.0 895,683 - -1.4 895,686 + +0.7 895,686 + -0.4 895,686 + -1.1 895,686 + +0.1 895,686 + -0.5 895,687 - -0.6 895,687 - +0.8 895,687 - -0.6 895,687 - -0.1 895,687 - -0.1 895,698 + +0.6 895,698 + +1.3 895,699 - -1.0 895,804 + -0.7 895,804 + -0.2 895,805 - -0.6 895,805 - -0.2 895,847 + -0.1 895,848 - +2.6 895,848 - +0.0 895,930 + -0.8 895,930 + -1.1 895,931 - +1.6 895,931 - +0.0 895,931 - -0.7 895,931 - +2.0 895,931 - -1.1 895,934 + -0.4 895,935 - -1.7 895,935 - +0.2 895,935 - -2.4 895,996 + ABZR87_RS04295 0.14 -2.0 895,996 + ABZR87_RS04295 0.14 -1.5 895,997 - ABZR87_RS04295 0.15 -1.7 896,102 + ABZR87_RS04295 0.52 -1.4 896,102 + ABZR87_RS04295 0.52 -0.4 896,102 + ABZR87_RS04295 0.52 +1.1 896,132 + ABZR87_RS04295 0.63 -2.3 896,132 + ABZR87_RS04295 0.63 +0.3 896,133 - ABZR87_RS04295 0.63 -0.1 896,133 - ABZR87_RS04295 0.63 -0.4 896,133 - ABZR87_RS04295 0.63 -1.4 896,133 - ABZR87_RS04295 0.63 -2.3
Or see this region's nucleotide sequence